Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20416120 .. 20417962

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGAATGTCGCAGTTAAGAAATTGTGTACACGTTATATTTAAAAGATTTTATGGTTTTACCATCTGGTTGGCATTTTCTTTCATCCTTCTGAACTTTCTGGTGATCGGAACTCAGGGATTCAATGCAACATTAACTGAACCAGTGGACAAACCTGAGAGACGAGGTGATCAAATAAAAGAAATAGAACTTAAACTGCGCCCTGACTTCAAAGAAACCTTGTCAGCACTCCACAATGATCCAACAACAACTACTGTCGTCCTCAGTGGGAGTGACAGAAATGTCTTTGATAATCTTGATATGTGGTTGGCAGCTGAAAACAGGATGTTTTTATGCCTTACAAAGGGAGAATCGATGACAAAAGTGCCTGAACATTTGAATATGGAATGGGTCGGCAGTGTGAAGCAAATTTTTGTGTATTTCACAGAAAGAACCCTGCGATCACATTTTAAACAACGTGAAACTTCCCTTGTGTGGAATTATATGCAGCATATGCTGCAGCATCTCTGGACTGGCCCGATTTCTAATGCCTCCGTTGATGTTGTTGAAGGTCGCCGGTCTGTGGAGGTTCAAGCAGTTGGTCCGACAAAGGGTGCAGCAATTGACCGTATATTGGGAGATATAGCTCTGGCATTCAAAAGCGGATCAACATCGTCTCATAGCAAAGCGCAACGACCCAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

229

Amino Acids

25.93

Weight (kDa)

9.12

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	61 - 210	5.4e-28	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	2 cut(s)	233, 652
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	5 cut(s)	343, 474, 562, 590, 613
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	6 cut(s)	124, 211, 379, 548, 572, 637
AluBI	AGCT	2 cut(s)	314, 626
AluI	AGCT	2 cut(s)	314, 626
Alw26I	GTCTC	2 cut(s)	154, 660
AlwI	GGATC	2 cut(s)	233, 652
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	5 cut(s)	311, 487, 496, 499, 596
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	201, 670
AspS9I	GGNCC	2 cut(s)	515, 581
AsuHPI	GGTGA	2 cut(s)	115, 179
AvaII	GGWCC	1 cut(s)	581
BbvI	GCAGC	5 cut(s)	323, 483, 499, 511, 608
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	154, 660
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	5 cut(s)	312, 488, 497, 500, 597
BlsI	GCNGC	5 cut(s)	313, 489, 498, 501, 598
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	515, 581
BmsI	GCATC	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	5 cut(s)	343, 474, 562, 590, 613
Bse118I	RCCGGY	1 cut(s)	555
Bse1I	ACTGG	2 cut(s)	143, 517
Bse8I	GATNNNNATC	1 cut(s)	649
BseCI	ATCGAT	1 cut(s)	353
BseGI	GGATG	2 cut(s)	84, 330
BseJI	GATNNNNATC	1 cut(s)	649
BseLI	CCNNNNNNNGG	5 cut(s)	343, 474, 562, 590, 613
BseMII	CTCAG	3 cut(s)	128, 147, 277
BseNI	ACTGG	2 cut(s)	143, 517
BseXI	GCAGC	5 cut(s)	323, 483, 499, 511, 608
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	516
BshVI	ATCGAT	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	556
BslI	CCNNNNNNNGG	5 cut(s)	343, 474, 562, 590, 613
BsmAI	GTCTC	2 cut(s)	154, 660
BsmBI	CGTCTC	2 cut(s)	154, 660
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	516
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	105, 169, 238, 440, 644
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	3 cut(s)	127, 148, 276
BspDI	ATCGAT	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	2 cut(s)	233, 652
BsrFI	RCCGGY	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	143, 517
BssAI	RCCGGY	1 cut(s)	555
BssMI	GATC	5 cut(s)	105, 169, 238, 440, 644
Bst4CI	ACNGT	2 cut(s)	256, 608
BstAPI	GCANNNNNTGC	2 cut(s)	493, 496
BstAUI	TGTACA	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	114, 156, 263
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	84, 330
BstHHI	GCGC	2 cut(s)	201, 670
BstKTI	GATC	5 cut(s)	108, 172, 241, 443, 647
BstMAI	GTCTC	2 cut(s)	154, 660
BstMBI	GATC	5 cut(s)	105, 169, 238, 440, 644
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 496
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	5 cut(s)	323, 483, 499, 511, 608
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	516
BsuTUI	ATCGAT	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	84, 330
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	150, 271, 403
CfoI	GCGC	2 cut(s)	201, 670
Cfr10I	RCCGGY	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	515, 581
ClaI	ATCGAT	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	29
CviJI	RGCY	3 cut(s)	314, 516, 626
CviKI_1	RGCY	3 cut(s)	314, 516, 626
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	3 cut(s)	114, 156, 263
DpnI	GATC	5 cut(s)	107, 171, 240, 442, 646
DpnII	GATC	5 cut(s)	105, 169, 238, 440, 644
DraI	TTTAAA	2 cut(s)	43, 451
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	581
EcoNI	CCTNNNNNAGG	1 cut(s)	341
Esp3I	CGTCTC	2 cut(s)	154, 660
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	5 cut(s)	312, 488, 497, 500, 597
FokI	GGATG	2 cut(s)	71, 337
Fsp4HI	GCNGC	5 cut(s)	312, 488, 497, 500, 597
GlaI	GCGC	2 cut(s)	200, 669
GluI	GCNGC	5 cut(s)	312, 488, 497, 500, 597
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	1 cut(s)	556
HhaI	GCGC	2 cut(s)	201, 670
Hin6I	GCGC	2 cut(s)	199, 668
HinP1I	GCGC	2 cut(s)	199, 668
HinfI	GANTC	2 cut(s)	120, 350
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	2 cut(s)	115, 179
Hpy166II	GTNNAC	3 cut(s)	29, 31, 148
Hpy188I	TCNGA	3 cut(s)	93, 110, 585
Hpy188III	TCNNGA	2 cut(s)	296, 508
Hpy8I	GTNNAC	3 cut(s)	29, 31, 148
HpyAV	CCTTC	2 cut(s)	98, 542
HpyCH4III	ACNGT	2 cut(s)	256, 608
HpyCH4IV	ACGT	2 cut(s)	33, 457
HpyCH4V	TGCA	4 cut(s)	128, 487, 499, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 496
HpyF3I	CTNAG	3 cut(s)	114, 156, 263
HpySE526I	ACGT	2 cut(s)	33, 457
HspAI	GCGC	2 cut(s)	199, 668
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	105, 169, 238, 440, 644
Lsp1109I	GCAGC	5 cut(s)	323, 483, 499, 511, 608
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	2 cut(s)	33, 457
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	5 cut(s)	107, 171, 240, 442, 646
MboI	GATC	5 cut(s)	105, 169, 238, 440, 644
MfeI	CAATTG	1 cut(s)	600
MluCI	AATT	4 cut(s)	22, 408, 478, 600
MmeI	TCCRAC	2 cut(s)	266, 608
MnlI	CCTC	4 cut(s)	158, 272, 541, 559
MseI	TTAA	5 cut(s)	17, 42, 134, 192, 450
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	556
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	632
MwoI	GCNNNNNNNGC	2 cut(s)	493, 496
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	5 cut(s)	105, 169, 238, 440, 644
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	120, 350
PkrI	GCNGC	5 cut(s)	313, 489, 498, 501, 598
PspPI	GGNCC	2 cut(s)	515, 581
PstI	CTGCAG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	5 cut(s)	17, 42, 134, 192, 450
SatI	GCNGC	5 cut(s)	312, 488, 497, 500, 597
Sau3AI	GATC	5 cut(s)	105, 169, 238, 440, 644
Sau96I	GGNCC	2 cut(s)	515, 581
SetI	ASST	9 cut(s)	36, 157, 169, 221, 316, 460, 553, 570, 628
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	581
Sse9I	AATT	4 cut(s)	22, 408, 478, 600
SsiI	CCGC	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	256, 608
TaiI	ACGT	2 cut(s)	36, 460
TaqI	TCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	22, 408, 478, 600
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	120, 350
Tru1I	TTAA	5 cut(s)	17, 42, 134, 192, 450
Tru9I	TTAA	5 cut(s)	17, 42, 134, 192, 450
TscAI	CASTG	3 cut(s)	150, 271, 403
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	311, 487, 496, 499, 596
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	3 cut(s)	150, 271, 403
VpaK11BI	GGWCC	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.