Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20448888 .. 20450045

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCATTTTGCTGCCCAGACCCATGTCGACAACTCCTTTGGTAACAGCTTTGAGTTCACAAAGAACAACATCTATGGCACCCATGTTCTCCTAGAAGCTTGCAAAGTCACTGGACAAATCAAGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGTGAGACTGATGAAGATGCTGTTGTGGGAAACCATGAAGCATCTCAACTTCTCCCAACAAATCCATACTCCGCAACAAAAGCGGGAGCAGAAATGCTTGTTATGGCATATGGCAGATCCTATGGATTGCCTGTTATAACGACCCGTGGAAACAATGTCTATGGACCAAATCAATTTCCTGAAAAATTGATTCCGAAGTTTATTCTGTTGGCCATGCAAGGGAAGCCTCTGCCCATTCACGGGGATGGTTCTAACGTGAGAAGCTATCTATATTGCGAGGATGTTGCTGAGGCTTTTGAGCTAATTCTTCACAAAGGAGAGATTGGACATGTGTACAATATTGGAACGAAGAGGGAAAGGAGAGTTATTGATGTGGCCGAAGATATATGCAGACTTTTCTCAATTGACCCAGAGACAAACATCAAGTTTGTTGAAAACAGACCTTTCAATGATCAGAGGTATTTCCTAGATGATGAGAAGCTGAAGATTTTGGGGTGGTCAGAACGAACTCAGTGGCAAGATGGGTTGAAGAAGACTATAGAATGGTACACTCAGAATCCTGATTGGTGGGGTGATGTATCTGGGGCTTTGCTACCTCATCCTCGAATGCTGATGATGCCTGGTGGGATTGAGAGACAATCGGAAGAGTCTGAAGAGGGTAAATCTGAATCTTTTGTCTCAAGTAATCCCCGAATGTTGGTTCCACCTTCCAAAGCTAGTGGCACTCCTCTTAAACCTCCCTATAAGTTCTTGATCTATCCAACAAACAAGGTAGGACTGGCTGGATTGGGGGTGTACTTGGGAAGCTATGTGAAAAACAAGGGATTCCTTATGAATATGGAAAAGGGCGTCTGGAGGATCGCTCATCACTCTTGGCAGATATTCAGAATGTCAAGCCAACCCATGTGTTCAATGCTGCTGGTGTCACTGGTAGACCTAATGTTGATTGGTGTGAATCTCATAAAGCAGAAACAATTCGAGTCAATGTTGCTGGAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

386

Amino Acids

43.6

Weight (kDa)

6.28

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDP_Man_Dehyd	PF16363	1 - 231	1.2e-48	GDP-mannose 4,6 dehydratase
Epimerase	PF01370	1 - 167	2.8e-40	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	1 - 199	1.1e-11	Polysaccharide biosynthesis protein
NAD_binding_4	PF07993	1 - 107	4.6e-11	Male sterility protein
RmlD_sub_bind	PF04321	2 - 234	7.3e-10	RmlD substrate binding domain
3Beta_HSD	PF01073	3 - 151	1.8e-13	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	27, 1089
AciI	CCGC	2 cut(s)	228, 239
AclWI	GGATC	2 cut(s)	267, 1022
AcoI	YGGCCR	2 cut(s)	366, 531
AcuI	CTGAAG	2 cut(s)	659, 828
AcyI	GRCGYC	1 cut(s)	1005
AfaI	GTAC	3 cut(s)	491, 704, 953
AfiI	CCNNNNNNNGG	4 cut(s)	375, 395, 396, 853
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	590, 604, 685, 1068
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	7 cut(s)	48, 98, 420, 457, 637, 872, 963
AluI	AGCT	7 cut(s)	48, 98, 420, 457, 637, 872, 963
Alw26I	GTCTC	4 cut(s)	155, 563, 784, 838
AlwI	GGATC	2 cut(s)	267, 1022
AoxI	GGCC	2 cut(s)	366, 531
ApeKI	GCWGC	2 cut(s)	11, 1072
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Asp700I	GAANNNNTTC	1 cut(s)	1130
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	170, 740
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	695
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	1059
BccI	CCATC	2 cut(s)	395, 671
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	4 cut(s)	155, 563, 784, 838
BfaI	CTAG	3 cut(s)	92, 623, 873
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	12, 1073
BlsI	GCNGC	2 cut(s)	13, 1074
Bme1390I	CCNGG	1 cut(s)	777
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	79, 858, 1152
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	163, 206, 762
BoxI	GACNNNNGTC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	1003, 1035
BpmI	CTGGAG	1 cut(s)	1030
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	820
BsaHI	GRCGYC	1 cut(s)	1005
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	4 cut(s)	375, 395, 396, 853
Bse1I	ACTGG	3 cut(s)	115, 939, 1089
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	4 cut(s)	129, 406, 442, 754
BseLI	CCNNNNNNNGG	4 cut(s)	375, 395, 396, 853
BseMII	CTCAG	3 cut(s)	435, 680, 722
BseNI	ACTGG	3 cut(s)	115, 939, 1089
BseRI	GAGGAG	1 cut(s)	873
BseXI	GCAGC	1 cut(s)	1059
BshFI	GGCC	2 cut(s)	368, 533
BshNI	GGYRCC	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	375, 395, 396, 853
BsmAI	GTCTC	4 cut(s)	155, 563, 784, 838
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	2 cut(s)	368, 533
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	272, 607, 909, 1014
BspACI	CCGC	2 cut(s)	228, 239
BspANI	GGCC	2 cut(s)	368, 533
BspCNI	CTCAG	3 cut(s)	436, 679, 721
BspLI	GGNNCC	3 cut(s)	79, 858, 1152
BspPI	GGATC	2 cut(s)	267, 1022
BspT107I	GGYRCC	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	115, 939, 1089
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	272, 607, 909, 1014
BssNI	GRCGYC	1 cut(s)	1005
Bst2UI	CCWGG	1 cut(s)	777
Bst6I	CTCTTC	3 cut(s)	500, 795, 804
BstACI	GRCGYC	1 cut(s)	1005
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	444, 666, 708
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	4 cut(s)	129, 406, 442, 754
BstKTI	GATC	4 cut(s)	275, 610, 912, 1017
BstMAI	GTCTC	4 cut(s)	155, 563, 784, 838
BstMBI	GATC	4 cut(s)	272, 607, 909, 1014
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 379, 772
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	1 cut(s)	488
BstPAI	GACNNNNGTC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	1059
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	368, 533
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	129, 406, 442, 754
BtsIMutI	CAGTG	3 cut(s)	108, 674, 1082
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	994
Csp6I	GTAC	3 cut(s)	490, 703, 952
CspCI	CAANNNNNGTGG	2 cut(s)	856, 891
CviAII	CATG	7 cut(s)	23, 83, 134, 191, 370, 485, 1060
CviQI	GTAC	3 cut(s)	490, 703, 952
DdeI	CTNAG	3 cut(s)	444, 666, 708
DpnI	GATC	4 cut(s)	274, 609, 911, 1016
DpnII	GATC	4 cut(s)	272, 607, 909, 1014
EaeI	YGGCCR	2 cut(s)	366, 531
Eam1104I	CTCTTC	3 cut(s)	500, 795, 804
EarI	CTCTTC	3 cut(s)	500, 795, 804
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	659, 828
EcoRII	CCWGG	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	7 cut(s)	26, 86, 137, 194, 373, 488, 1063
FatI	CATG	7 cut(s)	22, 82, 133, 190, 369, 484, 1059
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	2 cut(s)	27, 1089
Fnu4HI	GCNGC	2 cut(s)	12, 1073
FokI	GGATG	4 cut(s)	116, 413, 449, 741
Fsp4HI	GCNGC	2 cut(s)	12, 1073
FspBI	CTAG	3 cut(s)	92, 623, 873
GluI	GCNGC	2 cut(s)	12, 1073
GsuI	CTGGAG	1 cut(s)	1030
HaeIII	GGCC	2 cut(s)	368, 533
HgaI	GACGC	1 cut(s)	994
Hin1I	GRCGYC	1 cut(s)	1005
Hin1II	CATG	7 cut(s)	26, 86, 137, 194, 373, 488, 1063
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	7 cut(s)	346, 712, 803, 824, 981, 1111, 1136
HphI	GGTGA	2 cut(s)	170, 740
Hpy166II	GTNNAC	6 cut(s)	28, 57, 490, 705, 952, 1090
Hpy188I	TCNGA	8 cut(s)	351, 612, 658, 711, 799, 808, 823, 1043
Hpy188III	TCNNGA	5 cut(s)	121, 335, 716, 907, 1009
Hpy8I	GTNNAC	6 cut(s)	28, 57, 490, 705, 952, 1090
HpyAV	CCTTC	1 cut(s)	873
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	4, 102, 373, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 379, 772
HpyF3I	CTNAG	3 cut(s)	444, 666, 708
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	1005
Hsp92II	CATG	7 cut(s)	26, 86, 137, 194, 373, 488, 1063
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	272, 607, 909, 1014
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	1059
LweI	GCATC	3 cut(s)	163, 206, 762
MaeI	CTAG	3 cut(s)	92, 623, 873
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	41, 106, 1080
MalI	GATC	4 cut(s)	274, 609, 911, 1016
MboI	GATC	4 cut(s)	272, 607, 909, 1014
MboII	GAAGA	9 cut(s)	182, 455, 517, 548, 652, 697, 700, 812, 821
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	5 cut(s)	329, 341, 459, 558, 1130
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	812, 1145
MmeI	TCCRAC	1 cut(s)	941
Mox20I	TGGCCA	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	1130
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	777
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	236, 379, 772
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	4 cut(s)	272, 607, 909, 1014
NlaIII	CATG	7 cut(s)	26, 86, 137, 194, 373, 488, 1063
NlaIV	GGNNCC	3 cut(s)	79, 858, 1152
NmuCI	GTSAC	2 cut(s)	106, 1080
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	488
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	1130
PfeI	GAWTC	5 cut(s)	346, 712, 824, 981, 1111
PkrI	GCNGC	2 cut(s)	13, 1074
PleI	GAGTC	2 cut(s)	811, 1144
PpsI	GAGTC	2 cut(s)	811, 1144
PscI	ACATGT	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	3 cut(s)	79, 858, 1152
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	3 cut(s)	491, 704, 953
RsaNI	GTAC	3 cut(s)	490, 703, 952
RseI	CAYNNNNRTG	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	2 cut(s)	12, 1073
Sau3AI	GATC	4 cut(s)	272, 607, 909, 1014
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	812, 1145
ScrFI	CCNGG	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	163, 206, 762
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
Sse9I	AATT	5 cut(s)	329, 341, 459, 558, 1130
SsiI	CCGC	2 cut(s)	228, 239
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	92, 623, 873
StyD4I	CCNGG	1 cut(s)	775
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	27, 760, 1134
TasI	AATT	5 cut(s)	329, 341, 459, 558, 1130
TatI	WGTACW	2 cut(s)	489, 951
TfiI	GAWTC	5 cut(s)	346, 712, 824, 981, 1111
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	3 cut(s)	115, 674, 1089
TseFI	GTSAC	2 cut(s)	106, 1080
TseI	GCWGC	2 cut(s)	11, 1072
Tsp45I	GTSAC	2 cut(s)	106, 1080
TspDTI	ATGAA	4 cut(s)	118, 183, 207, 1004
TspRI	CASTG	3 cut(s)	115, 674, 1089
VpaK11BI	GGWCC	1 cut(s)	320
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	2 cut(s)	27, 1089
XmnI	GAANNNNTTC	1 cut(s)	1130
XspI	CTAG	3 cut(s)	92, 623, 873
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.