Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20698874 .. 20700328

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTAACTGAGTTTGTCAAAAAACTTTTGAGCGACAGACAACTGTCAAGGCCTTTGCCTGATCGTGATCGTTTGAAGGAGAAAAAGCCCTTAAAGGGGGTCCAGGTATCGCTTTCTTATGAAGAGCATACCAGTTATGAAGTCACTGGGGTGTCAGTTGAACCACAGAGCAAGTTGAAGTTCACTCATGAGAGGTACAGTATTGGGCTAAGGGATGTGGCAATGCCTGCACTTCAATCTGGAAGGGATTCAAAACCTGCTTATTTGCCAATGGAGCTTTGCACCATTGGTTCTGGGAAGCGGTACTCAAGGCTGAATGAGAGACAAGCAACAGCCCTTCTGAGAGCAACTTCTCAAAGCCCTGGAGATAGGGAGCGAAGCATATATCAGCTGAAATACCATCACAGTGGTCGTGAGAAGTCTGAAAATCCACTAATGGGGCAATGGAACATGATCAACAAAGTGTGGTATTGGTTAATGTGTTTTGACGGATCTGTGTGTATGTTGAACTCCAGTTCATACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

176

Amino Acids

20.17

Weight (kDa)

9.44

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAZ	PF02170	25 - 104	4.8e-10	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	499
AfaI	GTAC	2 cut(s)	197, 305
AfiI	CCNNNNNNNGG	3 cut(s)	95, 96, 437
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	6 cut(s)	76, 161, 178, 236, 252, 508
AjnI	CCWGG	2 cut(s)	102, 361
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	277, 391
AluI	AGCT	2 cut(s)	277, 391
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	104, 363
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	104, 363
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	104, 363
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	384, 496
Bpu10I	CCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 96, 437
Bse1I	ACTGG	3 cut(s)	132, 151, 513
Bse3DI	GCAATG	2 cut(s)	228, 449
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	104, 363
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	95, 96, 437
BseMI	GCAATG	2 cut(s)	228, 449
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	3 cut(s)	132, 151, 513
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	52
BslI	CCNNNNNNNGG	3 cut(s)	95, 96, 437
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	61, 67, 453, 491
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	228, 449
BsrI	ACTGG	3 cut(s)	132, 151, 513
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	61, 67, 453, 491
Bst2UI	CCWGG	2 cut(s)	104, 363
Bst4CI	ACNGT	3 cut(s)	45, 200, 407
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	9, 209, 341
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	4 cut(s)	64, 70, 456, 494
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	61, 67, 453, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 274
BstNI	CCWGG	2 cut(s)	104, 363
BstPAI	GACNNNNGTC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	102, 361
BstX2I	RGATCY	1 cut(s)	491
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	144, 412
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	196, 304
CviAII	CATG	2 cut(s)	188, 451
CviJI	RGCY	8 cut(s)	52, 88, 208, 277, 313, 335, 360, 391
CviKI_1	RGCY	8 cut(s)	52, 88, 208, 277, 313, 335, 360, 391
CviQI	GTAC	2 cut(s)	196, 304
DdeI	CTNAG	3 cut(s)	9, 209, 341
DpnI	GATC	4 cut(s)	63, 69, 455, 493
DpnII	GATC	4 cut(s)	61, 67, 453, 491
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	102, 361
FaeI	CATG	2 cut(s)	191, 454
FaiI	YATR	9 cut(s)	120, 129, 138, 189, 383, 385, 452, 503, 520
FatI	CATG	2 cut(s)	187, 450
FbaI	TGATCA	1 cut(s)	453
FokI	GGATG	1 cut(s)	227
GsuI	CTGGAG	2 cut(s)	384, 496
HaeIII	GGCC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	191, 454
HinfI	GANTC	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	342, 424
Hpy188III	TCNNGA	4 cut(s)	65, 188, 240, 413
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	70, 237, 347
HpyCH4III	ACNGT	3 cut(s)	45, 200, 407
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	2 cut(s)	230, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 274
HpyF3I	CTNAG	3 cut(s)	9, 209, 341
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	191, 454
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	61, 67, 453, 491
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	274, 373
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	4, 142
MalI	GATC	4 cut(s)	63, 69, 455, 493
MboI	GATC	4 cut(s)	61, 67, 453, 491
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	491
MnlI	CCTC	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	2 cut(s)	92, 476
MslI	CAYNNNNRTG	3 cut(s)	149, 405, 523
MspA1I	CMGCKG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	104, 363
MvaI	CCWGG	2 cut(s)	104, 363
MwoI	GCNNNNNNNGC	2 cut(s)	227, 274
NdeII	GATC	4 cut(s)	61, 67, 453, 491
NlaIII	CATG	2 cut(s)	191, 454
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	102, 361
PspGI	CCWGG	2 cut(s)	102, 361
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	197, 305
RsaNI	GTAC	2 cut(s)	196, 304
RseI	CAYNNNNRTG	3 cut(s)	149, 405, 523
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	92, 476
Sau3AI	GATC	4 cut(s)	61, 67, 453, 491
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	104, 363
SetI	ASST	6 cut(s)	108, 197, 259, 279, 393, 525
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	3 cut(s)	149, 405, 523
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	102, 361
TaaI	ACNGT	3 cut(s)	45, 200, 407
TaiI	ACGT	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	92, 476
Tru9I	TTAA	2 cut(s)	92, 476
TscAI	CASTG	2 cut(s)	151, 412
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	135, 153, 507
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	151, 412
VpaK11BI	GGWCC	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.