Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21059379 .. 21059741

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTAAGTTTACAATTAGCTCGTCAACATGCATCCAGCGATGATGAAAAGTTGGTTTATGAGGCGTCGATCTTATACGACACAAGCCATTGCGAGGAAGGGCTCCGGAAAGCAGATGAATCTATCAAAATTAAAAGATCCCTTGAGGCTTTCTTTTTGAAAGCCTATGCACTGGCAGACTCTAGCCAGGATCCATCCTCTTCATCGACTGTTGTATCCCTCCTCGAAGATGCCTTGAAGTGCCCATCGGACAAGTTGCGTAAAGGTCAAGTAAGTATTTTTCAACCAAATCATAAAAATCTACCTAACCCCACACTTAAAATTTGTCAAGTGAACTTCCTCTTTTACCCCTATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_7 TPR_8

Protein Analysis

121

Amino Acids

13.51

Weight (kDa)

6.27

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	105
AclWI	GGATC	3 cut(s)	132, 185, 198
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	160, 238, 284, 358
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	3 cut(s)	132, 185, 198
Aor13HI	TCCGGA	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	245
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	105
BccI	CCATC	2 cut(s)	202, 253
BciT130I	CCWGG	1 cut(s)	188
BciVI	GTATCC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	104, 192
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	41, 220
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	88
BseAI	TCCGGA	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	32, 194
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	105, 245
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	69, 137, 190
BspEI	TCCGGA	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	104, 192
BspPI	GGATC	3 cut(s)	132, 185, 198
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	69, 137, 190
BssNI	GRCGYC	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	32, 194
BstKTI	GATC	3 cut(s)	72, 140, 193
BstMBI	GATC	3 cut(s)	69, 137, 190
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	137, 190
BstYI	RGATCY	2 cut(s)	137, 190
BsuI	GTATCC	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	32, 194
BtsIMutI	CAGTG	1 cut(s)	170
CseI	GACGC	1 cut(s)	54
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	6 cut(s)	20, 87, 103, 149, 164, 186
CviKI_1	RGCY	6 cut(s)	20, 87, 103, 149, 164, 186
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	3 cut(s)	71, 139, 192
DpnII	GATC	3 cut(s)	69, 137, 190
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	32
FaiI	YATR	5 cut(s)	30, 60, 76, 168, 294
FatI	CATG	1 cut(s)	28
FokI	GGATG	2 cut(s)	19, 181
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	183
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	119, 179
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	11, 26, 334
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	3 cut(s)	11, 26, 334
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	32, 170
HpyF3I	CTNAG	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	69, 137, 190
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	49, 119, 158, 173, 200
LweI	GCATC	2 cut(s)	41, 220
MaeI	CTAG	1 cut(s)	183
MalI	GATC	3 cut(s)	71, 139, 192
MboI	GATC	3 cut(s)	69, 137, 190
MboII	GAAGA	2 cut(s)	192, 239
MflI	RGATCY	2 cut(s)	137, 190
MhlI	GDGCHC	2 cut(s)	105, 245
MluCI	AATT	4 cut(s)	14, 129, 321, 358
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	55, 88, 139, 208, 230, 233, 350
Mph1103I	ATGCAT	1 cut(s)	34
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	3 cut(s)	132, 318, 361
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	69, 137, 190
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	104, 192
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	104, 192
PsuI	RGATCY	2 cut(s)	137, 190
SaqAI	TTAA	3 cut(s)	132, 318, 361
Sau3AI	GATC	3 cut(s)	69, 137, 190
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	105, 245
SetI	ASST	3 cut(s)	22, 268, 307
SfaNI	GCATC	2 cut(s)	41, 220
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	14, 129, 321, 358
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	3 cut(s)	68, 206, 225
TasI	AATT	4 cut(s)	14, 129, 321, 358
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	132, 318, 361
Tru9I	TTAA	3 cut(s)	132, 318, 361
TscAI	CASTG	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	60, 132, 192
TspRI	CASTG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.