pycom03g20970

zinc-finger of the FCS-type, C2-C2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
21326560 .. 21327025
466 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGCTCAAAAGTGGTATTGAGCGACGTTCGTTCCATAGCCGGACTATTAGGTGCAAAGTAATGCTGAGGAACAGATCCAGAGCAGTGACCAGCAAGCAACCTCTGATGGCGGATTCTCAACCATCTCCAACTCAAAGGAACTACTCAAACATCCCATCTTTTTTCGATTCTCCAAGGTTCAGAGCCTTCACAACAAAGGGCAGTTCTGAAAACGATCCAAATTTTATCAGCCCAACTTCAATTCTTGACGCTACCAAGCCATTTGCTTTCGGAAAAAGCCCGTTTTCGGGTCGATCAAATCCAACCCAGAACCCCAAAAACTCAATCCGGAAACAAACCCTTATGGGAAAAATCTGA

Protein Analysis

119

Amino Acids

13.31

Weight (kDa)

11.57

Isoelectric Point (pI)

69.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 1 cut(s) 110
AclWI GGATC 2 cut(s) 69, 209
AcsI RAATTY 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 286, 287
AgsI TTSAA 1 cut(s) 240
AlwI GGATC 2 cut(s) 69, 209
Aor13HI TCCGGA 1 cut(s) 327
ApoI RAATTY 1 cut(s) 220
BbvCI CCTCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 100, 130, 163
Bpu10I CCTNAGC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 287
BseAI TCCGGA 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 286, 287
BseMII CTCAG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 40, 328
BslI CCNNNNNNNGG 2 cut(s) 286, 287
Bsp13I TCCGGA 1 cut(s) 327
Bsp143I GATC 3 cut(s) 74, 214, 293
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 327
BspPI GGATC 2 cut(s) 69, 209
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 3 cut(s) 74, 214, 293
BssT1I CCWWGG 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 3 cut(s) 77, 217, 296
BstMBI GATC 3 cut(s) 74, 214, 293
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 95
CseI GACGC 1 cut(s) 257
CviJI RGCY 5 cut(s) 39, 185, 231, 259, 279
CviKI_1 RGCY 5 cut(s) 39, 185, 231, 259, 279
DdeI CTNAG 1 cut(s) 65
DpnI GATC 3 cut(s) 76, 216, 295
DpnII GATC 3 cut(s) 74, 214, 293
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaiI YATR 2 cut(s) 36, 344
FokI GGATG 1 cut(s) 137
HapII CCGG 2 cut(s) 40, 328
HgaI GACGC 1 cut(s) 257
HinfI GANTC 2 cut(s) 113, 167
HpaII CCGG 2 cut(s) 40, 328
Hpy188I TCNGA 5 cut(s) 105, 182, 208, 272, 356
Hpy188III TCNNGA 3 cut(s) 78, 245, 328
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 25
Kpn2I TCCGGA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 74, 214, 293
LpnPI CCDG 5 cut(s) 53, 91, 103, 320, 341
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 76, 216, 295
MboI GATC 3 cut(s) 74, 214, 293
MflI RGATCY 1 cut(s) 74
MluCI AATT 2 cut(s) 220, 240
MmeI TCCRAC 2 cut(s) 152, 326
MnlI CCTC 2 cut(s) 60, 111
MroI TCCGGA 1 cut(s) 327
MspI CCGG 2 cut(s) 40, 328
NdeII GATC 3 cut(s) 74, 214, 293
NmuCI GTSAC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 113, 167
PsuI RGATCY 1 cut(s) 74
Sau3AI GATC 3 cut(s) 74, 214, 293
SetI ASST 4 cut(s) 28, 53, 103, 179
Sse9I AATT 2 cut(s) 220, 240
SsiI CCGC 1 cut(s) 110
StyI CCWWGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 165, 292
TasI AATT 2 cut(s) 220, 240
TfiI GAWTC 2 cut(s) 113, 167
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 1 cut(s) 90
XapI RAATTY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.