Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21424081 .. 21424570

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCACCAAGACGAAGCTGAGCTGCTGGTGGAAACAATAAATCAAACCGCCGGCCTTTTGCTTTCAAACGGGCTGTTGTTGTCCATTCCAGAGCATGAGCAACTTTTCAAGATCACCAACACAGTTTGCAACAAACTTCGCAGCTACCAAAACCAAAACCACAAGGTGAATGAGAACGGCGGCTACATCAAAGCAACTCAGGAAATCGAATTGGAGATGCAGCAGCTTGTTCAAATGGTGCTGCAAAAGCCTTTGGATGGTGCCATTGAATCTTCGATCAAGCAAACCTTTTTCGCGGTTGCAAGGAGCTTTTACTACTCTGCGTACTCGGACCCTGGAACAATCAATAGCCACCTTGCTAAAGTACTCTTCGAGAGAGTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

5.3

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	48, 180, 296
AdeI	CACNNNGTG	1 cut(s)	166
AfaI	GTAC	2 cut(s)	326, 366
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	66, 109, 233, 269
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	17, 22, 144, 226, 309
AluI	AGCT	5 cut(s)	17, 22, 144, 226, 309
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	5 cut(s)	22, 141, 220, 223, 241
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	106, 178
AvaII	GGWCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	5 cut(s)	9, 153, 228, 232, 235
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	336
BisI	GCNGC	6 cut(s)	23, 142, 181, 221, 224, 242
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	6 cut(s)	24, 143, 182, 222, 225, 243
BmcAI	AGTACT	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	262, 333
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	9, 212
BseXI	GCAGC	5 cut(s)	9, 153, 228, 232, 235
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	111, 276
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	48, 180, 296
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	10, 211
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	262, 333
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	111, 276
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	18, 198
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	114, 279
BstMBI	GATC	2 cut(s)	111, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	5 cut(s)	9, 153, 228, 232, 235
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	325, 365
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	2 cut(s)	325, 365
DdeI	CTNAG	2 cut(s)	18, 198
DpnI	GATC	2 cut(s)	113, 278
DpnII	GATC	2 cut(s)	111, 276
DraIII	CACNNNGTG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	23, 142, 181, 221, 224, 242
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	23, 142, 181, 221, 224, 242
GluI	GCNGC	6 cut(s)	23, 142, 181, 221, 224, 242
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	106, 178
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	4 cut(s)	89, 109, 200, 373
Hpy8I	GTNNAC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	5 cut(s)	4, 129, 220, 244, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	18, 198
Hsp92II	CATG	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	111, 276
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	6 cut(s)	11, 64, 102, 185, 321, 348
Lsp1109I	GCAGC	5 cut(s)	9, 153, 228, 232, 235
LweI	GCATC	1 cut(s)	207
MalI	GATC	2 cut(s)	113, 278
MboI	GATC	2 cut(s)	111, 276
MboII	GAAGA	2 cut(s)	264, 361
MluCI	AATT	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	50
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	247
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	111, 276
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	262, 333
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	24, 143, 182, 222, 225, 243
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	262, 333
PspPI	GGNCC	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
RsaI	GTAC	2 cut(s)	326, 366
RsaNI	GTAC	2 cut(s)	325, 365
SatI	GCNGC	6 cut(s)	23, 142, 181, 221, 224, 242
Sau3AI	GATC	2 cut(s)	111, 276
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	366
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	19, 24, 146, 168, 228, 290, 311, 357
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	48, 180, 296
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	207, 275, 372
TasI	AATT	1 cut(s)	209
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	269
TseI	GCWGC	5 cut(s)	22, 141, 220, 223, 241
VpaK11BI	GGWCC	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.