Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21581320 .. 21582817

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTTTCTGTTGTTCCAGATGGGGTTGTATGTTTTTTTGTCAGTTACTCTTATATGGATATGATAGTCAATAGCTGGAATGAAAATGGAATTTTGAAGCATAAGCTTGTTTTCATTGAGACCCAAGATGTGGTAGAGACTACCTTGGCTCTTGACAATTATCGTAAGGCTTGTGATTGTGGGAGGGGTGCTGTCTTCTTGTCTGTTGCCAGAGGAAAAGTAGCTGAAGGAATAGACTTTGATCGACATTATGGACGATTGGTGATCATGTTTGGCATTCCTTTCCAGTACACATTAAGCAACTCTAGTTCAACATTAGGCACTGATTTTTGGATGCTTAACTTCAACTTCAGATATAGCCGTCATGACAAGCGATCCAAATTGCCTGGATGGATACTGTCGCATTTACGTGATGCACATCTGAACTTGAGCACGGACATGGCTCTGCATATAGCACGAGAGGTTTGTCCTTATTTGTTATCACTTATTTCTACTATCTTATTACGTTTATTGATTAGCCTGAAATATGCATGTCTATTAGACTTTGTTTTTGTCGTTTTCCTTGCGAGTCGTTCATCGATTGTTTTACCAGTCTGTTGTGACCTAGTAAACCATCCCTTTAGAACTGTGCTAGATGATTTTGGGACCCAAAGATCAAGACCGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

224

Amino Acids

25.44

Weight (kDa)

8.47

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_2	PF13307	2 - 97	5.7e-21	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	2 cut(s)	246, 334
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	97, 312, 346
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	75, 106, 224
AluI	AGCT	3 cut(s)	75, 106, 224
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	113, 131
AlwI	GGATC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	90
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	645
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	3 cut(s)	14, 384, 621
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	113, 131
BfaI	CTAG	3 cut(s)	306, 605, 632
BfuI	GTATCC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	646, 647
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	324, 403
BpiI	GAAGAC	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	448
Bsa29I	ATCGAT	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	286, 590
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	339, 395, 613
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	286, 590
BshVI	ATCGAT	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	113, 131
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	241, 264, 374, 653
BspDI	ATCGAT	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	646, 647
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	286, 590
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	4 cut(s)	241, 264, 374, 653
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	399, 628
BstBAI	YACGTR	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	339, 395, 613
BstKTI	GATC	4 cut(s)	244, 267, 377, 656
BstMAI	GTCTC	2 cut(s)	113, 131
BstMBI	GATC	4 cut(s)	241, 264, 374, 653
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	578
BtsCI	GGATG	3 cut(s)	339, 395, 613
BtsIMutI	CAGTG	1 cut(s)	321
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	645
ClaI	ATCGAT	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	268, 365, 439, 531
CviJI	RGCY	8 cut(s)	75, 106, 149, 170, 224, 360, 443, 519
CviKI_1	RGCY	8 cut(s)	75, 106, 149, 170, 224, 360, 443, 519
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	243, 266, 376, 655
DpnII	GATC	4 cut(s)	241, 264, 374, 653
Eco130I	CCWWGG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	246, 334
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	271, 368, 442, 534
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	4 cut(s)	267, 364, 438, 530
FbaI	TGATCA	1 cut(s)	264
FokI	GGATG	3 cut(s)	346, 402, 600
FspBI	CTAG	3 cut(s)	306, 605, 632
Hin1II	CATG	4 cut(s)	271, 368, 442, 534
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	568
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	291, 610
Hpy188I	TCNGA	2 cut(s)	353, 423
Hpy188III	TCNNGA	4 cut(s)	17, 152, 365, 657
Hpy8I	GTNNAC	2 cut(s)	291, 610
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	399, 628
HpyCH4IV	ACGT	2 cut(s)	409, 505
HpyCH4V	TGCA	3 cut(s)	416, 448, 530
HpySE526I	ACGT	2 cut(s)	409, 505
Hsp92II	CATG	4 cut(s)	271, 368, 442, 534
KflI	GGGWCCC	1 cut(s)	645
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	241, 264, 374, 653
LpnPI	CCDG	8 cut(s)	30, 61, 223, 299, 372, 399, 533, 603
LweI	GCATC	2 cut(s)	324, 403
MaeI	CTAG	3 cut(s)	306, 605, 632
MaeII	ACGT	2 cut(s)	409, 505
MaeIII	GTNAC	2 cut(s)	44, 599
MalI	GATC	4 cut(s)	243, 266, 376, 655
MboI	GATC	4 cut(s)	241, 264, 374, 653
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	3 cut(s)	90, 157, 380
MlyI	GAGTC	1 cut(s)	577
MnlI	CCTC	3 cut(s)	177, 206, 454
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	2 cut(s)	296, 339
MslI	CAYNNNNRTG	2 cut(s)	408, 437
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	241, 264, 374, 653
NlaIII	CATG	4 cut(s)	271, 368, 442, 534
NlaIV	GGNNCC	2 cut(s)	646, 647
NmuCI	GTSAC	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	1 cut(s)	364
PctI	GAATGC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	130
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	410
PpuMI	RGGWCCY	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	646, 647
PspPI	GGNCC	1 cut(s)	645
PspPPI	RGGWCCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	408, 437
SaqAI	TTAA	2 cut(s)	296, 339
Sau3AI	GATC	4 cut(s)	241, 264, 374, 653
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	8 cut(s)	77, 108, 146, 226, 412, 465, 508, 606
SfaNI	GCATC	2 cut(s)	324, 403
SinI	GGWCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	408, 437
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	90, 157, 380
SspMI	CTAG	3 cut(s)	306, 605, 632
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	399, 628
TaiI	ACGT	2 cut(s)	412, 508
TaqI	TCGA	2 cut(s)	244, 578
TasI	AATT	3 cut(s)	90, 157, 380
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	296, 339
Tru9I	TTAA	2 cut(s)	296, 339
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	96, 103, 564
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	645
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	534
XspI	CTAG	3 cut(s)	306, 605, 632
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.