pycom03g21960

Protease Do-like 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
22144109 .. 22145078
970 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGAAAGTTAAGGCAGTTTTGCACCCACGAGTGCATTCGGTTCCCTTTCATATCGATGGAGGTCAGCCTTCTTACCTAATAATTGCTGGTTTGGTGTTTACCCCACTCTCAGAACCGCTGATAGAAGAGGAGTGTGATGACTCTATAGGGCTTAAACTCTTGGTGAAGGTGCGCTACTCTTTGGCTAGATTCAAAGGGGAGCAGATAGTAATCCTATCACAGGTCTTAGCAAATGAAGTAAACATTGGGTATGAAGACATGAGCAATCAGCAGGTTTTGAAGTTAAACGGAATCCAAATAAGGAACATTCATCATTTAGCCTACCTTGTAGACTGTAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.78

Weight (kDa)

6.5

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ_3 PF17815 14 - 111 1.6e-30 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 330
AciI CCGC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 2 cut(s) 193, 280
AhdI GACNNNNNGTC 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 1 cut(s) 50
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 220
BsmI GAATGC 1 cut(s) 34
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 122
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 262
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 109, 226
BstENI CCTNNNNNAGG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 54
BveI ACCTGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 54
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 67, 151, 185, 320
CviKI_1 RGCY 4 cut(s) 67, 151, 185, 320
DdeI CTNAG 2 cut(s) 109, 226
DriI GACNNNNNGTC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 218
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 51, 146, 252, 260
FatI CATG 1 cut(s) 258
FblI GTMKAC 1 cut(s) 330
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 3 cut(s) 140, 189, 291
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 99, 241, 331
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 3 cut(s) 99, 241, 331
HpyAV CCTTC 2 cut(s) 78, 160
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 22, 34
HpyF3I CTNAG 2 cut(s) 109, 226
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 72, 206, 257
MaeI CTAG 1 cut(s) 186
MboII GAAGA 2 cut(s) 137, 266
MluCI AATT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 2 cut(s) 53, 121
MseI TTAA 3 cut(s) 9, 153, 284
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 42
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 189, 291
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 9, 153, 284
SchI GAGTC 1 cut(s) 134
SetI ASST 6 cut(s) 64, 78, 171, 225, 276, 327
SfcI CTRYAG 1 cut(s) 144
SgeI CNNG 9 cut(s) 39, 41, 99, 172, 198, 233, 271, 284, 338
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 81
TfiI GAWTC 2 cut(s) 189, 291
Tru1I TTAA 3 cut(s) 9, 153, 284
Tru9I TTAA 3 cut(s) 9, 153, 284
TspDTI ATGAA 5 cut(s) 17, 38, 249, 267, 299
TspGWI ACGGA 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.