Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22529780 .. 22530055

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAACCAGATCAAACAGTGATCGATGCAAGTTTGGAGAAGCTGAAGAAGTTGCTTGACGTGTACGAAGCCAGGCTGAGCAACAAGAAGTTCCTTGCTGGTGATTTCTACAGCCTAGCTGACCTTCACCACTTTCCGGGCACTTTTTATTTCATGAAGACGCCTTGGTCTTCGTTGGTCAACGATCGTCCTCACGTCAAGGCGTGGTGGGAGGAGATTTCAGCTAGGCCTGCCTCCATGAAAGTGGCTGAGGGTATGAATTTTGGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

5.86

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	2 - 77	7.1e-19	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	12 - 77	3.4e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	60
AjiI	CACGTC	2 cut(s)	61, 196
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	43, 119, 224
AluI	AGCT	3 cut(s)	43, 119, 224
AoxI	GGCC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	113, 119
BaeGI	GKGCMC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	162, 164
BbvCI	CCTCAGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	2 cut(s)	116, 225
BfmI	CTRYAG	1 cut(s)	109
BlpI	GCTNAGC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	73, 138
BmgBI	CACGTC	2 cut(s)	61, 196
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	73, 138
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	162, 164
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	68, 240
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	10, 21, 184
Bsp1720I	GCTNAGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	69, 241
BspDI	ATCGAT	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	10, 21, 184
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	77, 249
BstKTI	GATC	3 cut(s)	13, 24, 187
BstMBI	GATC	3 cut(s)	10, 21, 184
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	71, 136
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	162, 164
BstXI	CCANNNNNNTGG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	24
BtrI	CACGTC	2 cut(s)	61, 196
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	154, 238
CviJI	RGCY	8 cut(s)	43, 71, 76, 114, 119, 224, 229, 248
CviKI_1	RGCY	8 cut(s)	43, 71, 76, 114, 119, 224, 229, 248
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	77, 249
DpnI	GATC	3 cut(s)	12, 23, 186
DpnII	GATC	3 cut(s)	10, 21, 184
DrdI	GACNNNNNNGTC	1 cut(s)	166
DseDI	GACNNNNNNGTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	157, 241
FaiI	YATR	3 cut(s)	155, 239, 257
FatI	CATG	2 cut(s)	153, 237
FspBI	CTAG	2 cut(s)	116, 225
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	157, 241
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	113, 119
Hpy166II	GTNNAC	2 cut(s)	64, 181
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	64, 181
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	60, 195
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	77, 249
HpySE526I	ACGT	2 cut(s)	60, 195
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	157, 241
Kzo9I	GATC	3 cut(s)	10, 21, 184
LpnPI	CCDG	6 cut(s)	21, 58, 84, 85, 150, 243
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	116, 225
MaeII	ACGT	2 cut(s)	60, 195
MalI	GATC	3 cut(s)	12, 23, 186
MboI	GATC	3 cut(s)	10, 21, 184
MboII	GAAGA	3 cut(s)	58, 162, 169
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	4 cut(s)	201, 205, 244, 244
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	73, 138
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	10, 21, 184
NlaIII	CATG	2 cut(s)	157, 241
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	229
Ple19I	CGATCG	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	6
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	10, 21, 184
ScrFI	CCNGG	2 cut(s)	73, 138
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	6 cut(s)	45, 63, 121, 126, 198, 226
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	259
SseBI	AGGCCT	1 cut(s)	229
SspMI	CTAG	2 cut(s)	116, 225
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	71, 136
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	63, 198
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	259
TscAI	CASTG	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	142, 170, 254, 272
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	259
XspI	CTAG	2 cut(s)	116, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.