pycom03g22530

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
22631618 .. 22633716
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGAAGATGGGGATATGCAGAGGCTGAAGACATTCCCAATAAATCAATCATGGTTGGTGACATCGGCTTTTGATGGCTGCTGCAAGGTAAGGATAGTGGATGAGACCACCCTGTCTGGTCTGAATGGTTTGTGTGATCTTAGTAAAGTGTTATTAGTCTGTTGGCAGATTTGGAATGAGAGGAATATGGTGGTTTTCCAAAATAAAATTTCAAACGCTACATGGATCGTTAAGTCTGCCCTCAATCTTGGGAGGGGTTCATTGATGCCGATGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.38

Weight (kDa)

7.64

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 78, 81
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 65, 68
BccI CCATC 3 cut(s) 2, 68, 265
BcoDI GTCTC 1 cut(s) 98
BisI GCNGC 2 cut(s) 79, 82
BlsI GCNGC 2 cut(s) 80, 83
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 98
BseGI GGATG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 65, 68
BsmAI GTCTC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 136, 225
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 98
BssMI GATC 2 cut(s) 136, 225
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 139, 228
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 136, 225
BstV1I GCAGC 2 cut(s) 65, 68
BstV2I GAAGAC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 25
CviAII CATG 2 cut(s) 51, 222
CviJI RGCY 3 cut(s) 25, 68, 78
CviKI_1 RGCY 3 cut(s) 25, 68, 78
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 138, 227
DpnII GATC 2 cut(s) 136, 225
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 2 cut(s) 54, 225
FaiI YATR 4 cut(s) 17, 52, 188, 223
FatI CATG 2 cut(s) 50, 221
Fnu4HI GCNGC 2 cut(s) 79, 82
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 79, 82
GluI GCNGC 2 cut(s) 79, 82
Hin1II CATG 2 cut(s) 54, 225
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 19, 84
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 54, 225
Kzo9I GATC 2 cut(s) 136, 225
LpnPI CCDG 2 cut(s) 102, 125
Lsp1109I GCAGC 2 cut(s) 65, 68
LweI GCATC 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 138, 227
MboI GATC 2 cut(s) 136, 225
MboII GAAGA 2 cut(s) 17, 40
MluCI AATT 1 cut(s) 207
MnlI CCTC 4 cut(s) 15, 174, 246, 251
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 231
NdeII GATC 2 cut(s) 136, 225
NlaIII CATG 2 cut(s) 54, 225
NmuCI GTSAC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 80, 83
PstNI CAGNNNCTG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 79, 82
Sau3AI GATC 2 cut(s) 136, 225
SetI ASST 1 cut(s) 90
SfaNI GCATC 1 cut(s) 255
SgeI CNNG 6 cut(s) 63, 97, 124, 129, 234, 260
Sse9I AATT 1 cut(s) 207
TasI AATT 1 cut(s) 207
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 78, 81
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 249
XapI RAATTY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.