Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22670005 .. 22670972

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTGTGGCTGCTCCGGCTCTGCATCACCACCTATGGCTCCGCTTCTCAAACCCAATAACACGAACAAGGCCGTCTCTTCCCGGCGGAGGAACCGCCTTCCTCACCCATTTGCAAATTCACCAGAACTCAGCCCGCATCTCTCTCATTTCCTGCTCTTCAACTTCTCAGTCCACTGAAGCCAGTACAGACACCCCCGAGTCTTGTGTGAATTTGGGTCTCCAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAGTTCAGTTTGAAACAGCGCTGAGTTTGGATCCCAACCCAATCGAGGCCCAGGCTGCACTGTATAACAAAGCCTGCTGTCATGCCTACAAAGGGGAAGGAAGGAAAGCTGCTGATTGTCTACGTACCGCCTTGAGAGAATATGACCTCAAATTTGGCACAATTTTGAATATCGATCGATCCCGACTTGGCCTCTTTCAGAGCTTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

156

Amino Acids

16.91

Weight (kDa)

8.93

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	5 cut(s)	43, 87, 96, 136, 384
AclWI	GGATC	3 cut(s)	281, 294, 429
AcsI	RAATTY	3 cut(s)	117, 211, 407
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	187, 382
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	89, 240, 301, 348
AgsI	TTSAA	3 cut(s)	162, 269, 424
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	226, 365, 459
AluI	AGCT	3 cut(s)	226, 365, 459
Alw26I	GTCTC	2 cut(s)	81, 224
AlwI	GGATC	3 cut(s)	281, 294, 429
Ama87I	CYCGRG	1 cut(s)	197
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	3 cut(s)	71, 303, 445
ApeKI	GCWGC	3 cut(s)	11, 311, 365
ApoI	RAATTY	3 cut(s)	117, 211, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	20, 97, 113
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	298, 352
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	81, 224
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	3 cut(s)	12, 312, 366
BlsI	GCNGC	3 cut(s)	13, 313, 367
Bme1390I	CCNGG	2 cut(s)	84, 308
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	41, 94, 288
BmrFI	CCNGG	2 cut(s)	84, 308
BmsI	GCATC	3 cut(s)	34, 147, 241
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	2 cut(s)	429, 433
BsaAI	YACGTR	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 240, 301, 348
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	308
BseCI	ATCGAT	2 cut(s)	429, 433
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	89, 240, 301, 348
BseMII	CTCAG	3 cut(s)	144, 182, 269
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	298, 352
BsgI	GTGCAG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	3 cut(s)	73, 305, 447
BshVI	ATCGAT	2 cut(s)	429, 433
BsiEI	CGRYCG	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	17, 84
BslI	CCNNNNNNNGG	4 cut(s)	89, 240, 301, 348
BsmAI	GTCTC	2 cut(s)	81, 224
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	73, 305, 447
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	286, 430, 434
BspACI	CCGC	5 cut(s)	43, 87, 96, 136, 384
BspANI	GGCC	3 cut(s)	73, 305, 447
BspCNI	CTCAG	3 cut(s)	143, 181, 270
BspDI	ATCGAT	2 cut(s)	429, 433
BspLI	GGNNCC	3 cut(s)	41, 94, 288
BspPI	GGATC	3 cut(s)	281, 294, 429
BspQI	GCTCTTC	2 cut(s)	163, 233
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	286, 430, 434
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	3 cut(s)	84, 163, 233
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	136, 331
BstDEI	CTNAG	3 cut(s)	130, 168, 278
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	289, 433, 437
BstMAI	GTCTC	2 cut(s)	81, 224
BstMBI	GATC	3 cut(s)	286, 430, 434
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 17, 311
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	82, 306
BstSNI	TACGTA	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	298, 352
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu15I	ATCGAT	2 cut(s)	429, 433
BsuRI	GGCC	3 cut(s)	73, 305, 447
BsuTUI	ATCGAT	2 cut(s)	429, 433
BtsIMutI	CAGTG	2 cut(s)	174, 314
Cac8I	GCNNGC	2 cut(s)	136, 331
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	2 cut(s)	429, 433
Csp6I	GTAC	2 cut(s)	186, 381
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	186, 381
DdeI	CTNAG	3 cut(s)	130, 168, 278
DpnI	GATC	3 cut(s)	288, 432, 436
DpnII	GATC	3 cut(s)	286, 430, 434
Eam1104I	CTCTTC	3 cut(s)	84, 163, 233
EarI	CTCTTC	3 cut(s)	84, 163, 233
EciI	GGCGGA	1 cut(s)	102
Eco105I	TACGTA	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	224
Eco47III	AGCGCT	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	37, 321, 339, 399
FatI	CATG	1 cut(s)	337
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	12, 312, 366
Fsp4HI	GCNGC	3 cut(s)	12, 312, 366
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	3 cut(s)	12, 312, 366
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	73, 305, 447
HapII	CCGG	2 cut(s)	17, 84
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	17, 84
HphI	GGTGA	3 cut(s)	20, 97, 113
Hpy166II	GTNNAC	2 cut(s)	174, 377
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	2 cut(s)	174, 377
HpyAV	CCTTC	3 cut(s)	109, 347, 351
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	25, 115, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 17, 311
HpyF3I	CTNAG	3 cut(s)	130, 168, 278
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	286, 430, 434
LguI	GCTCTTC	2 cut(s)	163, 233
LmnI	GCTCC	2 cut(s)	19, 45
LpnPI	CCDG	9 cut(s)	30, 97, 137, 166, 196, 236, 293, 320, 343
Lsp1109I	GCAGC	2 cut(s)	298, 352
LweI	GCATC	3 cut(s)	34, 147, 241
MaeII	ACGT	1 cut(s)	379
MalI	GATC	3 cut(s)	288, 432, 436
MboI	GATC	3 cut(s)	286, 430, 434
MboII	GAAGA	3 cut(s)	71, 150, 220
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	4 cut(s)	117, 211, 407, 417
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	83, 113, 295, 413, 458
MseI	TTAA	1 cut(s)	246
MspI	CCGG	2 cut(s)	17, 84
MspR9I	CCNGG	2 cut(s)	84, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	11, 17, 311
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	286, 430, 434
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	41, 94, 288
PciSI	GCTCTTC	2 cut(s)	163, 233
PkrI	GCNGC	3 cut(s)	13, 313, 367
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	41, 94, 288
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	187, 382
RsaNI	GTAC	2 cut(s)	186, 381
SapI	GCTCTTC	2 cut(s)	163, 233
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	12, 312, 366
Sau3AI	GATC	3 cut(s)	286, 430, 434
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	84, 308
SetI	ASST	6 cut(s)	36, 228, 367, 382, 405, 461
SfaNI	GCATC	3 cut(s)	34, 147, 241
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SnaBI	TACGTA	1 cut(s)	380
Sse9I	AATT	4 cut(s)	117, 211, 407, 417
SsiI	CCGC	5 cut(s)	43, 87, 96, 136, 384
StyD4I	CCNGG	2 cut(s)	82, 306
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	300, 429, 433
TasI	AATT	4 cut(s)	117, 211, 407, 417
TatI	WGTACW	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	181, 321
TseI	GCWGC	3 cut(s)	11, 311, 365
TspRI	CASTG	2 cut(s)	181, 321
XapI	RAATTY	3 cut(s)	117, 211, 407
XmiI	GTMKAC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.