Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22768966 .. 22769262

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTTAAAGCACAGCCGACTCTTGTTCATGGACGAGGCCACTGCATCAGTGGATTCACAGACCGATGCTGTAATACAGGTTATCCGGAAGATCGATCATCCGAGAGGATTTCGCTGCCTGTACAATTATCAGCATTGCACACAGAATACCAACGGTGATGGACTGCAATCGAGTTTTAGTCGTAGATGCAGGACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009624 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0012505 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

67

Amino Acids

7.61

Weight (kDa)

9.06

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	84
AfaI	GTAC	1 cut(s)	122
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
BmsI	GCATC	3 cut(s)	53, 55, 176
Bsa29I	ATCGAT	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	90, 94
BspANI	GGCC	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	120
BssMI	GATC	2 cut(s)	90, 94
Bst4CI	ACNGT	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	93, 97
BstMBI	GATC	2 cut(s)	90, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 54
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	3 cut(s)	15, 38, 198
CviKI_1	RGCY	3 cut(s)	15, 38, 198
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	92, 96
DpnII	GATC	2 cut(s)	90, 94
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	2 cut(s)	18, 53
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	4 cut(s)	44, 138, 166, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	90, 94
LpnPI	CCDG	4 cut(s)	62, 98, 131, 175
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	3 cut(s)	53, 55, 176
MaeI	CTAG	1 cut(s)	195
MalI	GATC	2 cut(s)	92, 96
MboI	GATC	2 cut(s)	90, 94
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	28, 98
MroI	TCCGGA	1 cut(s)	84
MseI	TTAA	1 cut(s)	5
MspI	CCGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	2 cut(s)	90, 94
NlaIII	CATG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	2 cut(s)	90, 94
SchI	GAGTC	1 cut(s)	12
SetI	ASST	2 cut(s)	81, 200
SfaNI	GCATC	3 cut(s)	53, 55, 176
SgeI	CNNG	8 cut(s)	34, 40, 46, 89, 97, 114, 130, 183
Sse9I	AATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	93, 170
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	124
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	46, 54
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	46, 54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.