Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029250

Physical Location & Seq

Genomic Coordinates Reverse (-)

22801737 .. 22805031

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCCAGGCGCTCAGATTATCGTGTGTTAGTCAGTGAACTTCCCCCTTCCGCTTCATGGCAAGATCTTAAGGATCATATGCGACGGGCGGGAGATGTCTGTTTCTCCCAAGTTTTTCGTGATGGTAGTGGCACAACAGGGATTGTAGACTACACAAACTTAGAAGATATGAAGTATGCGATCAAAAAGCTTGATGGCTCGGAGTTCCGAAATGCTTTTGACCGCCAATCTGTTCGCGTGAGGGAATATGATGCGAAGAGGGACTCGTCTAGGAGCCCTAGTCGCGGTCGATCTCATTCAAGAGGCAGGAGCTATAGTCGCAGTCGTAGTCCAAGTTATGGCCGGGGCAGAAGCAGGAGCAAGTCTCCAAAAACCAAATCTTCACGCCTCTCACCCGCTAGATCTCGATCAAGATCTGCTTCTCTCCCCCGTTCGCGATCAAGGTCTCGCTCTCCATCAGGATCACGATCAAGAAGCAGATCTCCAGTGCCTTCGAAACGCATAAGTAAAAGCCCGAAGAAGCACATTAGTAAAAGTCCAAAGAAGCGTAGTGCCAGCAGGAGTCCAATCCGGAGCAGGAGCAGGAGCAAGAGTTTGTCACGGTATCATTCTCGAGCATTATATTTTCTGTTGTTAGTGTTATCATTGTCGCACCATCTTTTTCTCCTCGCAACACATTGTCCACGAATTGCTCTTGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

235

Amino Acids

26.6

Weight (kDa)

11.78

Isoelectric Point (pI)

114.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 71	1.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029250)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22760 pycom11g27140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	3 cut(s)	237, 285, 436
AccIII	TCCGGA	1 cut(s)	570
AciI	CCGC	5 cut(s)	51, 89, 223, 285, 396
AclWI	GGATC	2 cut(s)	81, 469
AcoI	YGGCCR	1 cut(s)	340
AfiI	CCNNNNNNNGG	3 cut(s)	57, 284, 338
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	190, 312
AluI	AGCT	2 cut(s)	190, 312
Alw26I	GTCTC	2 cut(s)	369, 450
AlwI	GGATC	2 cut(s)	81, 469
Ama87I	CYCGRG	1 cut(s)	612
Aor13HI	TCCGGA	1 cut(s)	570
AoxI	GGCC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	384
AsuII	TTCGAA	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	278
BccI	CCATC	4 cut(s)	116, 188, 463, 663
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	369, 450
BfaI	CTAG	3 cut(s)	270, 279, 399
BfmI	CTRYAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	68
BglII	AGATCT	4 cut(s)	64, 401, 413, 479
Bme1390I	CCNGG	2 cut(s)	7, 344
BmeT110I	CYCGRG	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	7, 344
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	3 cut(s)	406, 412, 466
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	6 cut(s)	265, 295, 301, 331, 577, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 284, 338
Bse1I	ACTGG	1 cut(s)	485
Bse8I	GATNNNNATC	3 cut(s)	406, 412, 466
BseAI	TCCGGA	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	343
BseJI	GATNNNNATC	3 cut(s)	406, 412, 466
BseLI	CCNNNNNNNGG	3 cut(s)	57, 284, 338
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	656
Bsh1236I	CGCG	3 cut(s)	237, 285, 436
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	343, 571
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	57, 284, 338
BsmAI	GTCTC	2 cut(s)	369, 450
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	570
Bsp68I	TCGCGA	1 cut(s)	436
BspACI	CCGC	5 cut(s)	51, 89, 223, 285, 396
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	26
BspEI	TCCGGA	1 cut(s)	570
BspFNI	CGCG	3 cut(s)	237, 285, 436
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	81, 469
BspT104I	TTCGAA	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	251
BstAFI	CTTAAG	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	13, 160
BstFNI	CGCG	3 cut(s)	237, 285, 436
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	369, 450
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 318
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 342
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	3 cut(s)	237, 285, 436
BstX2I	RGATCY	4 cut(s)	64, 401, 413, 479
BstYI	RGATCY	4 cut(s)	64, 401, 413, 479
BsuRI	GGCC	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	40, 492
BtuMI	TCGCGA	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	556
CfoI	GCGC	1 cut(s)	12
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	6 cut(s)	190, 198, 276, 312, 342, 513
CviKI_1	RGCY	6 cut(s)	190, 198, 276, 312, 342, 513
DdeI	CTNAG	2 cut(s)	13, 160
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	60
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	56
FauI	CCCGC	2 cut(s)	82, 403
FauNDI	CATATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	278
FspBI	CTAG	3 cut(s)	270, 279, 399
GlaI	GCGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	343, 571
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	263, 562
HpaII	CCGG	2 cut(s)	343, 571
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	3 cut(s)	38, 148, 683
Hpy188I	TCNGA	3 cut(s)	16, 202, 209
Hpy8I	GTNNAC	3 cut(s)	38, 148, 683
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	57, 501
HpyCH4III	ACNGT	1 cut(s)	603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 318
HpyF3I	CTNAG	2 cut(s)	13, 160
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	570
LmnI	GCTCC	6 cut(s)	273, 309, 357, 573, 579, 585
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	270, 279, 399
MaeIII	GTNAC	1 cut(s)	597
MboII	GAAGA	4 cut(s)	176, 268, 372, 529
MflI	RGATCY	4 cut(s)	64, 401, 413, 479
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	257, 571
MnlI	CCTC	5 cut(s)	234, 252, 296, 398, 677
MroI	TCCGGA	1 cut(s)	570
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	2 cut(s)	343, 571
MspR9I	CCNGG	2 cut(s)	7, 344
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	3 cut(s)	237, 285, 436
MwoI	GCNNNNNNNGC	2 cut(s)	282, 318
NciI	CCSGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	78
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	597
NruI	TCGCGA	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	338
PleI	GAGTC	2 cut(s)	257, 570
PpsI	GAGTC	2 cut(s)	257, 570
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	275
PsuI	RGATCY	4 cut(s)	64, 401, 413, 479
RruI	TCGCGA	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	69
SchI	GAGTC	2 cut(s)	257, 571
ScrFI	CCNGG	2 cut(s)	7, 344
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	3 cut(s)	192, 314, 446
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	494
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	68, 612
SmoI	CTYRAG	2 cut(s)	68, 612
Sse9I	AATT	1 cut(s)	687
SsiI	CCGC	5 cut(s)	51, 89, 223, 285, 396
SspMI	CTAG	3 cut(s)	270, 279, 399
StyD4I	CCNGG	2 cut(s)	5, 342
TaaI	ACNGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	289, 406, 494, 613
TasI	AATT	1 cut(s)	687
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	40, 492
TseFI	GTSAC	1 cut(s)	597
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	2 cut(s)	45, 185
TspRI	CASTG	2 cut(s)	40, 492
Van91I	CCANNNNNTGG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	3 cut(s)	270, 279, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.