pycom03g23190
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
23109141 .. 23110189
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23190.1

Sequence Viewer

Length: 816 bp
ATGTATACATCCATCACATCAGCATCAAACTTGCTCGACAAGTTAACAATAGCCGGTTACGATGATGATGTGGGTTTTAGGTTCAACCTAGCGGATCAAGAACTCATCAACTTCTTCTTCTACCGCAAGGTTGTTCTCCGACAGCCACTACTGCCGCGACATGTTGGCTTCGTGCATGAGATTGATTTCTTGGGAGACCACCAGCCCTGGGAGATTTGGGATGCCTGCGGAGGACCTCACCCCTACGGCAAAGAAATCTACTTCTTCTGCAAGCTCAAGAAATTATCAAAATGGTCGGAGCACCATCACGATTGGTATTTGGAAACGTACACTCTTGCTAGCATTCCTGATGATGATCAACCAGTAGCGGCGATTTGCCGACTTAGAAAGAATTACCACAAGAGAAAACGTTATACACCCCGAAAGAAATCGAAAGAGAATCAGCGGCTGAAAAGAAAGAGATCGAGGGAGAATCAACGGACAATTGATGCAAACAAAAAGGTAAAATTATCTACACAATTAGAAATGGGGCAACAACCAGAACTAGGGCAAACATTAGAATTAAAGCAACCAGAGAGACAAAGCTGCTCAAGGAATTTAACTACTGATGAGAAGTTCAACATAAACGACGTGCCGCTATTGGTTATGATCAATGTCATAGTTTTTGTGTCCCGACGACGTGTGAGATTAATGCTTCTTATTATAATTATGATCACTATGGGGCTACTAATAGCAATTGGAAAGAGTACTCAATTTATACACGAGCCGCGGGGGCCGCCGGTCGACGTCAACATGACAACGCGGATGAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

272

Amino Acids

31.84

Weight (kDa)

9.61

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 94 4.4e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AatII GACGTC 1 cut(s) 789
AccI GTMKAC 2 cut(s) 5, 783
AccII CGCG 3 cut(s) 157, 769, 802
AclI AACGTT 1 cut(s) 409
AclWI GGATC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 595
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 2 cut(s) 329, 748
AfiI CCNNNNNNNGG 2 cut(s) 208, 545
AflIII ACRYGT 2 cut(s) 160, 679
AgsI TTSAA 2 cut(s) 85, 619
AjiI CACGTC 2 cut(s) 631, 680
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 274, 585
AluI AGCT 2 cut(s) 274, 585
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 189, 571
AlwI GGATC 1 cut(s) 102
AlwNI CAGNNNCTG 1 cut(s) 448
AoxI GGCC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 585
ApoI RAATTY 1 cut(s) 595
AseI ATTAAT 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 233, 773
AsuHPI GGTGA 1 cut(s) 230
AsuNHI GCTAGC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 233
BauI CACGAG 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 20, 312
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 3 cut(s) 355, 648, 711
BcoDI GTCTC 2 cut(s) 189, 571
BfaI CTAG 3 cut(s) 89, 339, 545
BglI GCCNNNNNGGC 1 cut(s) 772
BisI GCNGC 7 cut(s) 155, 369, 446, 586, 635, 767, 776
BlsI GCNGC 7 cut(s) 156, 370, 447, 587, 636, 768, 777
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 233
BmgBI CACGTC 2 cut(s) 631, 680
BmgT120I GGNCC 2 cut(s) 233, 773
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 3 cut(s) 32, 211, 478
BmtI GCTAGC 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 260, 574
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 206, 207, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 545
Bse118I RCCGGY 2 cut(s) 53, 778
Bse1I ACTGG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 206, 207, 767
BseGI GGATG 3 cut(s) 8, 226, 810
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 208, 545
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 572
Bsh1236I CGCG 3 cut(s) 157, 769, 802
Bsh1285I CGRYCG 1 cut(s) 783
BshFI GGCC 1 cut(s) 775
BsiEI CGRYCG 1 cut(s) 783
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 54, 779
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 2 cut(s) 208, 545
BsmAI GTCTC 2 cut(s) 189, 571
BsmFI GGGAC 1 cut(s) 655
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 1 cut(s) 775
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 5 cut(s) 94, 355, 461, 648, 711
BspANI GGCC 1 cut(s) 775
BspFNI CGCG 3 cut(s) 157, 769, 802
BspLI GGNNCC 1 cut(s) 774
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 53, 778
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 2 cut(s) 53, 778
BssECI CCNNGG 3 cut(s) 206, 207, 767
BssMI GATC 5 cut(s) 94, 355, 461, 648, 711
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 786
BssSI CACGAG 1 cut(s) 761
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 786
BstC8I GCNNGC 3 cut(s) 226, 272, 340
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 3 cut(s) 8, 226, 810
BstFNI CGCG 3 cut(s) 157, 769, 802
BstKTI GATC 5 cut(s) 97, 358, 464, 651, 714
BstMAI GTCTC 2 cut(s) 189, 571
BstMBI GATC 5 cut(s) 94, 355, 461, 648, 711
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 3 cut(s) 151, 772, 775
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 3 cut(s) 157, 769, 802
BstV1I GCAGC 1 cut(s) 572
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 775
BtgI CCRYGG 1 cut(s) 767
BtrI CACGTC 2 cut(s) 631, 680
BtsCI GGATG 3 cut(s) 8, 226, 810
Cac8I GCNNGC 3 cut(s) 226, 272, 340
CaiI CAGNNNCTG 1 cut(s) 448
Cfr10I RCCGGY 2 cut(s) 53, 778
Cfr13I GGNCC 2 cut(s) 233, 773
Cfr42I CCGCGG 1 cut(s) 770
Csp6I GTAC 2 cut(s) 328, 747
CviAII CATG 3 cut(s) 161, 176, 793
CviQI GTAC 2 cut(s) 328, 747
DdeI CTNAG 1 cut(s) 383
DpnI GATC 5 cut(s) 96, 357, 463, 650, 713
DpnII GATC 5 cut(s) 94, 355, 461, 648, 711
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 164, 179, 796
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 160, 175, 792
FauI CCCGC 1 cut(s) 762
FbaI TGATCA 3 cut(s) 355, 648, 711
FblI GTMKAC 2 cut(s) 5, 783
Fnu4HI GCNGC 7 cut(s) 155, 369, 446, 586, 635, 767, 776
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 7 cut(s) 155, 369, 446, 586, 635, 767, 776
FspBI CTAG 3 cut(s) 89, 339, 545
GluI GCNGC 7 cut(s) 155, 369, 446, 586, 635, 767, 776
HaeIII GGCC 1 cut(s) 775
HapII CCGG 2 cut(s) 54, 779
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 3 cut(s) 164, 179, 796
HincII GTYRAC 3 cut(s) 45, 784, 790
HindII GTYRAC 3 cut(s) 45, 784, 790
HinfI GANTC 2 cut(s) 439, 472
HpaI GTTAAC 1 cut(s) 45
HpaII CCGG 2 cut(s) 54, 779
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 5 cut(s) 6, 45, 330, 784, 790
Hpy188I TCNGA 2 cut(s) 140, 298
Hpy188III TCNNGA 5 cut(s) 98, 277, 308, 347, 672
Hpy8I GTNNAC 5 cut(s) 6, 45, 330, 784, 790
Hpy99I CGWCG 4 cut(s) 632, 678, 681, 788
HpyCH4IV ACGT 5 cut(s) 326, 409, 630, 679, 786
HpyCH4V TGCA 3 cut(s) 175, 270, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 772, 775
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 5 cut(s) 326, 409, 630, 679, 786
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 3 cut(s) 164, 179, 796
Ksp22I TGATCA 3 cut(s) 355, 648, 711
KspAI GTTAAC 1 cut(s) 45
KspI CCGCGG 1 cut(s) 770
Kzo9I GATC 5 cut(s) 94, 355, 461, 648, 711
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 3 cut(s) 32, 211, 478
MaeI CTAG 3 cut(s) 89, 339, 545
MaeII ACGT 5 cut(s) 326, 409, 630, 679, 786
MaeIII GTNAC 1 cut(s) 56
MalI GATC 5 cut(s) 96, 357, 463, 650, 713
MboI GATC 5 cut(s) 94, 355, 461, 648, 711
MboII GAAGA 3 cut(s) 106, 109, 256
MfeI CAATTG 2 cut(s) 483, 735
MhlI GDGCHC 1 cut(s) 303
MmeI TCCRAC 2 cut(s) 163, 276
MnlI CCTC 3 cut(s) 224, 246, 459
MseI TTAA 4 cut(s) 44, 563, 599, 689
MspA1I CMGCKG 2 cut(s) 445, 769
MspI CCGG 2 cut(s) 54, 779
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 2 cut(s) 483, 735
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 3 cut(s) 157, 769, 802
MwoI GCNNNNNNNGC 3 cut(s) 151, 772, 775
NdeII GATC 5 cut(s) 94, 355, 461, 648, 711
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 164, 179, 796
NlaIV GGNNCC 1 cut(s) 774
NspI RCATGY 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 207
PciI ACATGT 1 cut(s) 160
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 439, 472
PkrI GCNGC 7 cut(s) 156, 370, 447, 587, 636, 768, 777
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 689
PsiI TTATAA 1 cut(s) 704
Psp1406I AACGTT 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 2 cut(s) 233, 773
PspPPI RGGWCCY 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 448
RsaI GTAC 2 cut(s) 329, 748
RsaNI GTAC 2 cut(s) 328, 747
SacII CCGCGG 1 cut(s) 770
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 4 cut(s) 44, 563, 599, 689
SatI GCNGC 7 cut(s) 155, 369, 446, 586, 635, 767, 776
Sau3AI GATC 5 cut(s) 94, 355, 461, 648, 711
Sau96I GGNCC 2 cut(s) 233, 773
ScaI AGTACT 1 cut(s) 748
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 3 cut(s) 32, 211, 478
Sfr303I CCGCGG 1 cut(s) 770
SgrBI CCGCGG 1 cut(s) 770
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 275, 589
SmoI CTYRAG 2 cut(s) 275, 589
SspMI CTAG 3 cut(s) 89, 339, 545
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 5 cut(s) 329, 412, 633, 682, 789
TaqI TCGA 4 cut(s) 36, 431, 464, 783
TatI WGTACW 1 cut(s) 746
TauI GCSGC 6 cut(s) 157, 371, 448, 637, 769, 778
TfiI GAWTC 2 cut(s) 439, 472
Tru1I TTAA 4 cut(s) 44, 563, 599, 689
Tru9I TTAA 4 cut(s) 44, 563, 599, 689
TseI GCWGC 1 cut(s) 585
TspGWI ACGGA 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 233
VspI ATTAAT 1 cut(s) 689
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 5, 783
XspI CTAG 3 cut(s) 89, 339, 545
ZraI GACGTC 1 cut(s) 787
ZrmI AGTACT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.