Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23157896 .. 23158652

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAAGAGGCCGCAGCTGAGTATTTTTTCCATTACATTACCAACTACATCCTTAGTGTTTTATTTTAGCATCTCTTCCTCTATCATCTTTCTCTCTTTCTTTCTCATTTGGGTCAACCAATCCTCTCCTTCCAACATTCTATTGCCCGCCCAACAAACCACCAATTGTCTCGAGTATTTCAACACATCCTCCATCGTTTTCGGTTTCACACCATCACCCTTAGCCACCACAGTTCCACCTCTTCCAGCTGCTGATCATCCGACTAATTTGACTACCGGAGATGATTTTATCGATACAAATAATGTTTCCGTTACAGAAAATAGTCCTTCGAAAGATTTATCAGTCTTGAAGTTGACGGACACCCCTTCCAGTACACCTGAAAATGCTTCTTCTAGCTATTTTGAGAACGAAGCCCAAGCAGTGGCAGTACTGCAACATGAGTTACATGATGACGAAGACGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGACAACGGTGGCAGTGAGTTAGATATTATTATTGCCAGTAACTTCACAGCAGTGGCACAAAAAATTCCATCAGCTGCAATCTTAATTGACAAGATTGAGACAAATACTCATGAAGACCAAAATGTTCCATCGGTGAACACGACTGTAGAGCAAAATGCTCCATTGAACCGGACTCATGAAGAGCAAACTGCACTGAAGAGCAAAATGCTCCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

236

Amino Acids

25.87

Weight (kDa)

4.18

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	2 cut(s)	11, 147
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	2 cut(s)	373, 429
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	181, 349, 655
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	16, 248, 396, 563
AluI	AGCT	4 cut(s)	16, 248, 396, 563
Alw26I	GTCTC	2 cut(s)	173, 581
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	13, 248, 563
ApoI	RAATTY	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	207, 634
AsuII	TTCGAA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	170
BbsI	GAAGAC	3 cut(s)	462, 495, 609
BbvI	GCAGC	3 cut(s)	25, 235, 550
BccI	CCATC	4 cut(s)	200, 220, 565, 625
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	173, 581
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	4 cut(s)	11, 14, 249, 564
BlsI	GCNGC	4 cut(s)	12, 15, 250, 565
BmcAI	AGTACT	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	3 cut(s)	462, 495, 609
Bpu10I	CCTNAGC	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	291
BsaWI	WCCGGW	2 cut(s)	275, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	369, 525
BseCI	ATCGAT	1 cut(s)	291
BseGI	GGATG	3 cut(s)	47, 185, 256
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	369, 525
BseXI	GCAGC	3 cut(s)	25, 235, 550
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	276, 658
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	173, 581
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	11, 147
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	9
BspDI	ATCGAT	1 cut(s)	291
BspHI	TCATGA	2 cut(s)	598, 664
BspQI	GCTCTTC	2 cut(s)	663, 680
BspT104I	TTCGAA	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	369, 525
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	232, 497, 634
Bst6I	CTCTTC	4 cut(s)	79, 246, 663, 680
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	17, 52, 220
BstF5I	GGATG	3 cut(s)	47, 185, 256
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	173, 581
BstMBI	GATC	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	25, 235, 550
BstV2I	GAAGAC	3 cut(s)	462, 495, 609
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	47, 185, 256
BtsI	GCAGTG	3 cut(s)	426, 508, 546
BtsIMutI	CAGTG	4 cut(s)	426, 508, 546, 680
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	2 cut(s)	598, 664
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	372, 428
CviAII	CATG	4 cut(s)	437, 446, 599, 665
CviJI	RGCY	7 cut(s)	10, 16, 224, 248, 396, 413, 563
CviKI_1	RGCY	7 cut(s)	10, 16, 224, 248, 396, 413, 563
CviQI	GTAC	2 cut(s)	372, 428
DdeI	CTNAG	3 cut(s)	17, 52, 220
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	4 cut(s)	79, 246, 663, 680
EarI	CTCTTC	4 cut(s)	79, 246, 663, 680
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	170
FaeI	CATG	4 cut(s)	440, 449, 602, 668
FaiI	YATR	4 cut(s)	438, 447, 600, 666
FatI	CATG	4 cut(s)	436, 445, 598, 664
FauI	CCCGC	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	11, 14, 249, 564
FokI	GGATG	3 cut(s)	34, 172, 243
Fsp4HI	GCNGC	4 cut(s)	11, 14, 249, 564
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	4 cut(s)	11, 14, 249, 564
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	276, 658
Hin1II	CATG	4 cut(s)	440, 449, 602, 668
HincII	GTYRAC	2 cut(s)	115, 354
HindII	GTYRAC	2 cut(s)	115, 354
HinfI	GANTC	1 cut(s)	661
HpaII	CCGG	2 cut(s)	276, 658
HphI	GGTGA	2 cut(s)	207, 634
Hpy166II	GTNNAC	4 cut(s)	115, 354, 374, 625
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	170, 346, 599, 665
Hpy8I	GTNNAC	4 cut(s)	115, 354, 374, 625
HpyAV	CCTTC	3 cut(s)	138, 336, 375
HpyCH4III	ACNGT	3 cut(s)	232, 497, 634
HpyCH4V	TGCA	3 cut(s)	433, 566, 680
HpyF3I	CTNAG	3 cut(s)	17, 52, 220
Hsp92II	CATG	4 cut(s)	440, 449, 602, 668
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	2 cut(s)	663, 680
LmnI	GCTCC	2 cut(s)	652, 702
LpnPI	CCDG	6 cut(s)	258, 289, 382, 390, 538, 671
Lsp1109I	GCAGC	3 cut(s)	25, 235, 550
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	310, 441, 527
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	163
MluCI	AATT	5 cut(s)	163, 265, 552, 573, 701
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	2 cut(s)	156, 284
MnlI	CCTC	4 cut(s)	88, 133, 199, 249
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	3 cut(s)	16, 248, 563
MspI	CCGG	2 cut(s)	276, 658
MunI	CAATTG	1 cut(s)	163
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	4 cut(s)	440, 449, 602, 668
NspV	TTCGAA	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	2 cut(s)	598, 664
PciSI	GCTCTTC	2 cut(s)	663, 680
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	12, 15, 250, 565
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	3 cut(s)	16, 248, 563
RsaI	GTAC	2 cut(s)	373, 429
RsaNI	GTAC	2 cut(s)	372, 428
RseI	CAYNNNNRTG	1 cut(s)	539
SapI	GCTCTTC	2 cut(s)	663, 680
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	4 cut(s)	11, 14, 249, 564
Sau3AI	GATC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	1 cut(s)	655
SetI	ASST	6 cut(s)	18, 241, 250, 379, 398, 565
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	5 cut(s)	163, 265, 552, 573, 701
SsiI	CCGC	2 cut(s)	11, 147
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	232, 497, 634
TaqI	TCGA	3 cut(s)	171, 291, 329
TasI	AATT	5 cut(s)	163, 265, 552, 573, 701
TatI	WGTACW	2 cut(s)	371, 427
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	4 cut(s)	426, 508, 546, 687
TseI	GCWGC	3 cut(s)	13, 248, 563
TspDTI	ATGAA	3 cut(s)	17, 615, 681
TspGWI	ACGGA	2 cut(s)	298, 371
TspRI	CASTG	4 cut(s)	426, 508, 546, 687
Van91I	CCANNNNNTGG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.