pycom03g23370

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
23214236 .. 23214703
468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGGAATGGCGTCCGTCATCCATGAAATTTTCTGTTGGTGTGGATATCAATACAGGCCAAGAATATATGATGCCTCCTTTGCCAGATTTAGAAAGAATGATTGAACCACTACCAGATTTTATTGATGCCATGTTATGGGAACCAGAAAATGAGGTTGTAAGTGAAGATACTGATTCAGAGTATAATGTTACTGATGAAAATTCCAGTGAAGGGGAGAAAGGAAATATTAGCACCAGTTCTTCTAGTGATCCAGACTGCAGCGAAGAAGACAGTGAAGCTGGATGCAGTCTCAAGGATGGTCTTCGTCGATCAAGGAGAAAAAGACCAAGGGTTGAGTCTTCTGAGAGGCGTGTTAAGAAAAGGAGAGTGGGTGAGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

128

Amino Acids

14.51

Weight (kDa)

4.66

Isoelectric Point (pI)

86.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 26, 199
AcyI GRCGYC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 135, 210
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 2 cut(s) 26, 199
AsuHPI GGTGA 1 cut(s) 383
BbsI GAAGAC 3 cut(s) 273, 293, 330
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 3 cut(s) 60, 115, 272
BpiI GAAGAC 3 cut(s) 273, 293, 330
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 210
Bse1I ACTGG 2 cut(s) 204, 234
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 3 cut(s) 17, 287, 301
BseLI CCNNNNNNNGG 2 cut(s) 135, 210
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 204, 234
BseXI GCAGC 1 cut(s) 270
BshFI GGCC 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 135, 210
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 247, 308
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 260
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 204, 234
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 2 cut(s) 247, 308
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 17, 287, 301
BstKTI GATC 2 cut(s) 250, 311
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 247, 308
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 3 cut(s) 273, 293, 330
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 3 cut(s) 17, 287, 301
BtsIMutI CAGTG 2 cut(s) 211, 277
CviAII CATG 2 cut(s) 22, 130
CviJI RGCY 2 cut(s) 57, 278
CviKI_1 RGCY 2 cut(s) 57, 278
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 249, 310
DpnII GATC 2 cut(s) 247, 308
Eco130I CCWWGG 1 cut(s) 326
Eco32I GATATC 1 cut(s) 46
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 25, 133
FaiI YATR 7 cut(s) 23, 66, 68, 131, 136, 183, 378
FatI CATG 2 cut(s) 21, 129
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 3 cut(s) 4, 294, 308
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 2 cut(s) 25, 133
HinfI GANTC 2 cut(s) 173, 335
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 178, 343
Hpy188III TCNNGA 1 cut(s) 251
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 258, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 25, 133
Kzo9I GATC 2 cut(s) 247, 308
LpnPI CCDG 8 cut(s) 39, 96, 126, 156, 217, 247, 264, 264
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 3 cut(s) 60, 115, 272
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 249, 310
MboI GATC 2 cut(s) 247, 308
MboII GAAGA 6 cut(s) 176, 231, 275, 278, 293, 330
MluCI AATT 2 cut(s) 26, 199
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 3 cut(s) 84, 145, 339
MseI TTAA 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 247, 308
NlaIII CATG 2 cut(s) 25, 133
NlaIV GGNNCC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 141
PstI CTGCAG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 247, 308
SchI GAGTC 1 cut(s) 344
SetI ASST 2 cut(s) 156, 280
SfaNI GCATC 3 cut(s) 60, 115, 272
SfcI CTRYAG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 26, 199
SspI AATATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 307
TasI AATT 2 cut(s) 26, 199
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 211, 277
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 38, 210
TspRI CASTG 2 cut(s) 211, 277
Van91I CCANNNNNTGG 1 cut(s) 135
XapI RAATTY 2 cut(s) 26, 199
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.