pycom03g23510

DnaJ heat shock amino-terminal domain protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
23311602 .. 23311946
345 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGCAACCATCGCGGAGGAGGAGGCAGCGGAGAAACAGAGGAAGAAGGCTGCAGCTGCATTACAGGCAGCTCAAGCCGCAGTAATTCAAGTGCAAGTGTCCCAAACCCAAGCCCAAGAATCTCGAATGGAATCCTCCTCCACTTGTTCTTTCAATTCTAGCAATAGGAACGGTAGTAATCATAACAACAACAACACGCACTCCTCGTCAGCGGAAGCGAAAGCAGCGGCGGCAGCGTCGTTCCAAGGGGTGTTTTGCAGAGACATTGCGGTGGTGGGGAGTTTGCTGTCGCAGGTTGGGTTTAACCGCCCAATTCAAGTCAAGTATGAGGCATTGAGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.01

Weight (kDa)

7.74

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccII CGCG 1 cut(s) 14
AciI CCGC 8 cut(s) 14, 29, 78, 212, 227, 230, 269, 307
AgsI TTSAA 3 cut(s) 89, 154, 317
AluBI AGCT 2 cut(s) 56, 71
AluI AGCT 2 cut(s) 56, 71
Alw26I GTCTC 1 cut(s) 255
ApeKI GCWGC 7 cut(s) 26, 50, 53, 56, 68, 224, 233
BbvI GCAGC 7 cut(s) 37, 38, 43, 65, 80, 236, 245
BccI CCATC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 264
BseRI GAGGAG 4 cut(s) 32, 35, 127, 193
BseXI GCAGC 7 cut(s) 37, 38, 43, 65, 80, 236, 245
Bsh1236I CGCG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 85
BspACI CCGC 8 cut(s) 14, 29, 78, 212, 227, 230, 269, 307
BspFNI CGCG 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 173
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 255
BstMWI GCNNNNNNNGC 8 cut(s) 11, 56, 65, 74, 77, 224, 230, 233
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 7 cut(s) 37, 38, 43, 65, 80, 236, 245
BveI ACCTGC 1 cut(s) 283
CseI GACGC 1 cut(s) 225
CviJI RGCY 5 cut(s) 50, 56, 71, 77, 113
CviKI_1 RGCY 5 cut(s) 50, 56, 71, 77, 113
Eco130I CCWWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaiI YATR 2 cut(s) 183, 327
FaqI GGGAC 1 cut(s) 85
FspBI CTAG 1 cut(s) 159
HgaI GACGC 1 cut(s) 225
HinfI GANTC 2 cut(s) 119, 131
Hpy188III TCNNGA 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 53, 59, 94, 258
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 56, 65, 74, 77, 224, 230, 233
LpnPI CCDG 2 cut(s) 50, 278
Lsp1109I GCAGC 7 cut(s) 37, 38, 43, 65, 80, 236, 245
MaeI CTAG 1 cut(s) 159
MboII GAAGA 1 cut(s) 55
MluCI AATT 3 cut(s) 84, 154, 312
MnlI CCTC 8 cut(s) 10, 13, 16, 33, 145, 148, 214, 322
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 4 cut(s) 29, 56, 212, 227
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 8 cut(s) 11, 56, 65, 74, 77, 224, 230, 233
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 2 cut(s) 119, 131
PstI CTGCAG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 303
SetI ASST 3 cut(s) 58, 73, 297
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 3 cut(s) 84, 154, 312
SsiI CCGC 8 cut(s) 14, 29, 78, 212, 227, 230, 269, 307
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 124
TasI AATT 3 cut(s) 84, 154, 312
TauI GCSGC 3 cut(s) 80, 230, 233
TfiI GAWTC 2 cut(s) 119, 131
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 7 cut(s) 26, 50, 53, 56, 68, 224, 233
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.