pycom03g23630

ATP-citrate synthase beta chain protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
23411840 .. 23412932
1093 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGCTGCTTTTATGCAACCAACCATTAGAGTTGTGGCAATTATTACTGAAGGTGTACCTAAGTCAGACACTAAGCAATTGATCACATATGCACGGGTTGTCATTGGCCCTACTACTGTTGGAGGAATTCAAGCTGGAGCTTTTAAGATTGGTGACATTGCTGGAACAATTGATAACATTATTCACTGCAAGTTATACAGGCCTAGATCTATTGGTTTTGTCTCCAAATATGTATGTAAATGGACAACCTCCCGTGATTTGCAGGCTTTTAAACCACCAAAAAAACATAAGGGTCTCTGCATGTAA

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

9.97

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 134, 140
AluI AGCT 2 cut(s) 134, 140
Alw26I GTCTC 2 cut(s) 226, 299
AoxI GGCC 2 cut(s) 106, 200
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 164
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 226, 299
BfaI CTAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 206
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 156
BshFI GGCC 2 cut(s) 108, 202
BsmAI GTCTC 2 cut(s) 226, 299
BsnI GGCC 2 cut(s) 108, 202
Bso31I GGTCTC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 81, 206
BspANI GGCC 2 cut(s) 108, 202
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 156
BssMI GATC 2 cut(s) 81, 206
Bst4CI ACNGT 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 60, 72
BstKTI GATC 2 cut(s) 84, 209
BstMAI GTCTC 2 cut(s) 226, 299
BstMBI GATC 2 cut(s) 81, 206
BstNSI RCATGY 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 2 cut(s) 108, 202
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 301
CviJI RGCY 6 cut(s) 5, 108, 134, 140, 202, 266
CviKI_1 RGCY 6 cut(s) 5, 108, 134, 140, 202, 266
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 60, 72
DpnI GATC 2 cut(s) 83, 208
DpnII GATC 2 cut(s) 81, 206
DraI TTTAAA 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 126
FaeI CATG 1 cut(s) 304
FaiI YATR 8 cut(s) 14, 88, 90, 196, 231, 235, 288, 302
FatI CATG 1 cut(s) 300
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 108, 202
Hin1II CATG 1 cut(s) 304
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 16, 92, 189, 262, 300
HpyF3I CTNAG 2 cut(s) 60, 72
Hsp92II CATG 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 206
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 4 cut(s) 120, 147, 184, 248
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 83, 208
MboI GATC 2 cut(s) 81, 206
MfeI CAATTG 2 cut(s) 77, 168
MflI RGATCY 1 cut(s) 206
MluCI AATT 4 cut(s) 39, 77, 126, 168
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 2 cut(s) 116, 259
MseI TTAA 2 cut(s) 144, 270
MunI CAATTG 2 cut(s) 77, 168
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 81, 206
NlaIII CATG 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 304
PceI AGGCCT 1 cut(s) 202
PkrI GCNGC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 144, 270
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 81, 206
Sau96I GGNCC 1 cut(s) 107
SetI ASST 5 cut(s) 55, 61, 136, 142, 251
Sse9I AATT 4 cut(s) 39, 77, 126, 168
SseBI AGGCCT 1 cut(s) 202
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 1 cut(s) 118
TasI AATT 4 cut(s) 39, 77, 126, 168
Tru1I TTAA 2 cut(s) 144, 270
Tru9I TTAA 2 cut(s) 144, 270
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 152
TspRI CASTG 1 cut(s) 191
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.