Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14700 .. 16043

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGCTCTCGGCGTCTGACCTGCCAGCCATGTACTCGCTGCTGACCAACTCTTTGAGTGGCGACGAAAGTGTGCGGAAACCGGCGGAGTTAGCGCTCTCGCAGTCGGAGGCAAGGCCTGGTTTCTGCTCTTGTCTGATGGAAGTGATAACTGCCAAGGATTTGGTAGCTCATGTGGATGTTCGCTTGTTGGCTTCAGTGTATTTCAAGAACAGCGAAAGTTATAAACTTATAATCTCGTTGAGCTTTATGTTACTTAAGATTTCTCTCTTTAATCAATTCTTCATAAGAAATGTGAACTGGGGGAAATTTTTGAAAGGAGCCACATGTCTCAGGTGTATGATGCAGAGAGCCAGAATGGACATGGATCCCATTTTTTTGCTTAGTTTGAAGGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

134

Amino Acids

14.98

Weight (kDa)

8.98

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	29 - 72	1e-06	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	225, 233
Acc36I	ACCTGC	1 cut(s)	30
AciI	CCGC	2 cut(s)	76, 86
AclWI	GGATC	2 cut(s)	362, 375
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	96
AflII	CTTAAG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	208, 316, 391
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	170, 246
AluI	AGCT	2 cut(s)	170, 246
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	362, 375
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	308
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspLEI	GCGC	2 cut(s)	7, 97
BamHI	GGATCC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	335
BfoI	RGCGCY	2 cut(s)	8, 98
BfrI	CTTAAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	322, 369
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	76, 86
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	322, 369
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	362, 375
BspTI	CTTAAG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	332, 383
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	2 cut(s)	8, 98
BstHHI	GCGC	2 cut(s)	7, 97
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 92
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	7, 97
Cfr10I	RCCGGY	1 cut(s)	82
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	4 cut(s)	31, 173, 327, 364
CviJI	RGCY	7 cut(s)	29, 118, 170, 194, 246, 323, 353
CviKI_1	RGCY	7 cut(s)	29, 118, 170, 194, 246, 323, 353
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	332, 383
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	34, 176, 330, 367
FaiI	YATR	9 cut(s)	32, 174, 225, 233, 251, 287, 328, 341, 365
FatI	CATG	4 cut(s)	30, 172, 326, 363
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	41
GlaI	GCGC	2 cut(s)	6, 96
GluI	GCNGC	1 cut(s)	41
HaeII	RGCGCY	2 cut(s)	8, 98
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	7, 97
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	34, 176, 330, 367
Hin6I	GCGC	2 cut(s)	5, 95
HinP1I	GCGC	2 cut(s)	5, 95
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	19, 109, 138
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 92
HpyF3I	CTNAG	2 cut(s)	332, 383
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	34, 176, 330, 367
HspAI	GCGC	2 cut(s)	5, 95
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	35, 39, 96, 105, 132, 286, 319, 367
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	2 cut(s)	278, 308
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	258, 273
MslI	CAYNNNNRTG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	11, 92
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	34, 176, 330, 367
NlaIV	GGNNCC	2 cut(s)	322, 369
NspI	RCATGY	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	118
PciI	ACATGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	326
PsiI	TTATAA	2 cut(s)	225, 233
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	322, 369
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	258, 273
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	4 cut(s)	24, 172, 248, 338
SfaNI	GCATC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	278, 308
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	76, 86
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	156
TasI	AATT	2 cut(s)	278, 308
TatI	WGTACW	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	258, 273
Tru9I	TTAA	2 cut(s)	258, 273
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.