Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18047 .. 19003

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTGATTTTGGACCAAAATTTATGGGCCAGGTTGTTGTTGGTGATATCAGCTCAGTTCTTTGATTATAGCTGGCACCTTTGGCAGAGCGACGTGCAAACAATTTTACATGGTTTTTCTACAATTTCTGAAAGCTATAACACAAATGCATTGGAGCTACATCAGGATGAGCTTTATCTAACTTGTGAGCGATGGCTGCTGTGCCTAAGGATAATATGCCAGTTAATAGTTTCAGGGTTTCCAAGTGATGCAAAATGTTTGCAGGAGGTCCGGCCAGTGAAGGAGGTCTCGCCCCTGCTCTTGAATGCCATTCAGTCATTTCTCCCATATTGTGAGATACTGTTCTCCTGTCCAATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

121

Amino Acids

13.98

Weight (kDa)

4.76

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	304
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	53, 72, 135, 157, 172
AluI	AGCT	5 cut(s)	53, 72, 135, 157, 172
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	27, 272
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	13, 27, 268
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	13, 268
AxyI	CCTNAGG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	13, 268
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	13, 27, 268
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	220, 275
Bse21I	CCTNAGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	220, 275
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	2 cut(s)	29, 274
BshNI	GGYRCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	29, 274
Bso31I	GGTCTC	1 cut(s)	292
BspANI	GGCC	2 cut(s)	29, 274
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	220, 275
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	54, 206
BstF5I	GGATG	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 196
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	29, 274
BtgZI	GCGATG	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	13, 27, 268
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	8 cut(s)	29, 53, 72, 135, 157, 172, 196, 274
CviKI_1	RGCY	8 cut(s)	29, 53, 72, 135, 157, 172, 196, 274
DdeI	CTNAG	2 cut(s)	54, 206
EaeI	YGGCCR	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	13, 268
Eco81I	CCTNAGG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	1 cut(s)	113
FaiI	YATR	6 cut(s)	25, 69, 111, 138, 217, 328
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	29, 274
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	1 cut(s)	113
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	164, 301
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	97, 149, 251, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 196
HpyF3I	CTNAG	2 cut(s)	54, 206
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	93
MluCI	AATT	4 cut(s)	19, 102, 123, 354
MnlI	CCTC	2 cut(s)	259, 277
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	2 cut(s)	224, 361
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	82, 196
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	151
PctI	GAATGC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	3 cut(s)	13, 27, 268
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	224, 361
SatI	GCNGC	1 cut(s)	197
Sau96I	GGNCC	3 cut(s)	13, 27, 268
ScrFI	CCNGG	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	2 cut(s)	13, 268
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	19, 102, 123, 354
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	96
TasI	AATT	4 cut(s)	19, 102, 123, 354
Tru1I	TTAA	2 cut(s)	224, 361
Tru9I	TTAA	2 cut(s)	224, 361
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	196
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	13, 268
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.