pycom04g00070

Importin-beta N-terminal domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
30757 .. 30969
213 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGTTTGTCTGTTGTAATATCTTGACTCAAAATTATTGGCAGGTTGCAGTCGATATAACTGAAGACTACATTATCTTAGGCGGATCTGAATTTCTTAGTATGCATGCTTCAAGTGTTGCTCAAATTCTAGATCTGGTTGTTGGAAATGTGAATGATAGAGGACTTCTTTCAGTTCTTCCTGTCATTGATATTCTAGTACAGGTAACTGATTAA

Protein Analysis

71

Amino Acids

7.68

Weight (kDa)

4.05

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO11 PF25758 12 - 69 2.3e-07 Importin-11-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 89, 123
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 111
AlwI GGATC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 89, 123
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
BbsI GAAGAC 1 cut(s) 69
BfaI CTAG 2 cut(s) 128, 194
BfuAI ACCTGC 1 cut(s) 31
BglII AGATCT 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 83, 130
BspACI CCGC 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 91
BssMI GATC 2 cut(s) 83, 130
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 76, 95
BstKTI GATC 2 cut(s) 86, 133
BstMBI GATC 2 cut(s) 83, 130
BstNSI RCATGY 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 83, 130
BstYI RGATCY 2 cut(s) 83, 130
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 104
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 76, 95
DpnI GATC 2 cut(s) 85, 132
DpnII GATC 2 cut(s) 83, 130
EciI GGCGGA 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 105
FaeI CATG 1 cut(s) 107
FaiI YATR 3 cut(s) 56, 101, 105
FatI CATG 1 cut(s) 103
FspBI CTAG 2 cut(s) 128, 194
FspEI CC 9 cut(s) 22, 26, 63, 66, 119, 126, 144, 185, 192
Hin1II CATG 1 cut(s) 107
HinfI GANTC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 22, 128
HpyCH4V TGCA 2 cut(s) 47, 103
HpyF3I CTNAG 2 cut(s) 76, 95
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 2 cut(s) 83, 130
LpnPI CCDG 4 cut(s) 26, 119, 185, 192
MaeI CTAG 2 cut(s) 128, 194
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 85, 132
MboI GATC 2 cut(s) 83, 130
MboII GAAGA 2 cut(s) 74, 167
MflI RGATCY 2 cut(s) 83, 130
MluCI AATT 3 cut(s) 31, 89, 123
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 105
MseI TTAA 1 cut(s) 211
NdeII GATC 2 cut(s) 83, 130
NlaIII CATG 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 105
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PsuI RGATCY 2 cut(s) 83, 130
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 211
Sau3AI GATC 2 cut(s) 83, 130
SchI GAGTC 1 cut(s) 19
SetI ASST 2 cut(s) 45, 204
SgeI CNNG 8 cut(s) 34, 53, 116, 123, 140, 146, 191, 206
SphI GCATGC 1 cut(s) 107
Sse9I AATT 3 cut(s) 31, 89, 123
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 128, 194
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 31, 89, 123
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
XapI RAATTY 2 cut(s) 89, 123
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 107
XspI CTAG 2 cut(s) 128, 194
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.