Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31163 .. 31703

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTGCTTTGCAGTAAATTAATTGTTGTATGTCTGAGTGGAGGCGACGACCAAGATCCTCCTAAGACAGCTGTTAAAGCATCTGCAGCTGCCATCCTGGCAAGAGTTTTGGTTATGAATACCAATTACCTAGCCCGTTTGACGTCAGAACCATCACTTTTGTCGTTCCTTCCGAAGTCAGGTGTTCCAACTGAGGAAAATGTACTTCTTTGTCTTGTTGACATATGGCTTGACAAGGTTAGTACAGTACAACATGCATCTCCATTGCAAGGATACTCCTCAGGATTGTTCAGTTTTCCCTGTCTTATCTTATATTATCAGACCAGTACATATGTGTATGTTTTCAGACACCGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

7.66

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	4 cut(s)	204, 244, 249, 328
AfiI	CCNNNNNNNGG	2 cut(s)	179, 269
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	71, 89
AluI	AGCT	2 cut(s)	71, 89
AlwI	GGATC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	86, 89
ApoI	RAATTY	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	76, 98
BccI	CCATC	2 cut(s)	101, 160
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	87, 90
BlsI	GCNGC	2 cut(s)	88, 91
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	89, 266
BsaHI	GRCGYC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 269
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	179, 269
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	26, 183, 294
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	76, 98
BslI	CCNNNNNNNGG	2 cut(s)	179, 269
Bsp143I	GATC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	27, 184, 293
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	35, 63, 192, 280
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 86, 98
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	76, 98
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	93
Csp6I	GTAC	4 cut(s)	203, 243, 248, 327
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	4 cut(s)	71, 89, 134, 229
CviKI_1	RGCY	4 cut(s)	71, 89, 134, 229
CviQI	GTAC	4 cut(s)	203, 243, 248, 327
DdeI	CTNAG	4 cut(s)	35, 63, 192, 280
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	1 cut(s)	257
FaiI	YATR	9 cut(s)	31, 116, 224, 226, 255, 313, 331, 333, 339
FatI	CATG	1 cut(s)	253
FauNDI	CATATG	2 cut(s)	224, 331
Fnu4HI	GCNGC	2 cut(s)	87, 90
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	87, 90
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	87, 90
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	36, 148, 174, 321, 347
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	12, 86, 257, 268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 86, 98
HpyF3I	CTNAG	4 cut(s)	35, 63, 192, 280
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	83, 110, 165, 267, 313, 337
Lsp1109I	GCAGC	2 cut(s)	76, 98
LweI	GCATC	2 cut(s)	89, 266
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	143
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	4 cut(s)	17, 21, 124, 354
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	35, 69, 187, 289
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	20, 75
MspA1I	CMGCKG	2 cut(s)	71, 89
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	77, 86, 98
NdeI	CATATG	2 cut(s)	224, 331
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	88, 91
PshBI	ATTAAT	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	71, 89
RsaI	GTAC	4 cut(s)	204, 244, 249, 328
RsaNI	GTAC	4 cut(s)	203, 243, 248, 327
SaqAI	TTAA	2 cut(s)	20, 75
SatI	GCNGC	2 cut(s)	87, 90
Sau3AI	GATC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	6 cut(s)	73, 91, 132, 146, 184, 240
SfaNI	GCATC	2 cut(s)	89, 266
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	4 cut(s)	17, 21, 124, 354
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	146
TasI	AATT	4 cut(s)	17, 21, 124, 354
TatI	WGTACW	4 cut(s)	202, 242, 247, 326
Tru1I	TTAA	2 cut(s)	20, 75
Tru9I	TTAA	2 cut(s)	20, 75
TseI	GCWGC	2 cut(s)	86, 89
TspDTI	ATGAA	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	20
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	131
ZraI	GACGTC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.