Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

774196 .. 774792

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCTGCGATTAAAGTCGATTCTGCTAAGCCGTATTTCGCTACTAGCAGTCTTGTGATTGGGGATGCTCTCTGTTCTAGCTTGTTAGCCGTGATAAACAAGTTTGCCATTACCAAATTCAACTACCCTGGCCTTTTGACTGCATTGCAGTACCTTACATCTGCTTTGGGAGTTTGGGGTTTGGGAAAGTCAGGATTTTTGCACCACGATCCCTTCACATGGCAGACGGCCAAGACGTTTTTGCCCGCTGCACTTGTGTTTTACCTTGCTATCTTTATCAACACCAATCTTCTTCGCCATGCGAATGTGGATACGTTTGTAGTGTTTAGATCCTGCACGCCCCTTTTCGTTGCGCTGGCGGATACAGCGTTTAGGAAGCAGCCAATCCCGTCTAAGCTTACCTTTGTATCGTTGATGATCATTTTGGGTGGAGCTGTTGGTTATGTGGCCAGCGATTGGGGTTTTAGTTCGACTGCGTATTCGTGGGCGTTTGCCGATTTGGTGACCATTGCAACTAAGATGGTTTGTATTAAGCATATGTTCACGAATGTCGGTTTGAATGCTTGGGGTTTTGTGTTGTACAACAATCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

199

Amino Acids

21.66

Weight (kDa)

9.32

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	26 - 183	4.3e-09	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	456
AciI	CCGC	2 cut(s)	246, 359
AclWI	GGATC	2 cut(s)	203, 324
AcoI	YGGCCR	2 cut(s)	228, 447
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	2 cut(s)	152, 581
AfiI	CCNNNNNNNGG	2 cut(s)	219, 456
AgsI	TTSAA	2 cut(s)	121, 559
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	81, 397, 434
AluI	AGCT	3 cut(s)	81, 397, 434
AlwI	GGATC	2 cut(s)	203, 324
AoxI	GGCC	3 cut(s)	130, 228, 447
ApeKI	GCWGC	2 cut(s)	248, 379
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	514
BaeI	ACNNNNGTAYC	4 cut(s)	303, 336, 390, 423
BalI	TGGCCA	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	235, 391
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	3 cut(s)	16, 74, 243
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	2 cut(s)	304, 355
BclI	TGATCA	1 cut(s)	417
BfaI	CTAG	2 cut(s)	45, 78
BfuI	GTATCC	2 cut(s)	304, 355
BisI	GCNGC	2 cut(s)	249, 380
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	2 cut(s)	250, 381
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 456
Bse3DI	GCAATG	2 cut(s)	143, 507
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	219, 456
BseMI	GCAATG	2 cut(s)	143, 507
BseXI	GCAGC	2 cut(s)	235, 391
BsgI	GTGCAG	2 cut(s)	234, 319
BshFI	GGCC	3 cut(s)	132, 230, 449
BslI	CCNNNNNNNGG	2 cut(s)	219, 456
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	132, 230, 449
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	208, 329, 417
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	246, 359
BspANI	GGCC	3 cut(s)	132, 230, 449
BspPI	GGATC	2 cut(s)	203, 324
BsrDI	GCAATG	2 cut(s)	143, 507
BsrGI	TGTACA	1 cut(s)	579
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	208, 329, 417
Bst2UI	CCWGG	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	246, 338, 357, 451
BstDEI	CTNAG	3 cut(s)	27, 393, 516
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	211, 332, 420
BstMBI	GATC	3 cut(s)	208, 329, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	129
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	235, 391
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuI	GTATCC	2 cut(s)	304, 355
BsuRI	GGCC	3 cut(s)	132, 230, 449
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	246, 338, 357, 451
CfoI	GCGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	151, 580
CviAII	CATG	2 cut(s)	219, 299
CviJI	RGCY	9 cut(s)	31, 81, 89, 132, 230, 382, 397, 434, 449
CviKI_1	RGCY	9 cut(s)	31, 81, 89, 132, 230, 382, 397, 434, 449
CviQI	GTAC	2 cut(s)	151, 580
DdeI	CTNAG	3 cut(s)	27, 393, 516
DpnI	GATC	3 cut(s)	210, 331, 419
DpnII	GATC	3 cut(s)	208, 329, 417
EaeI	YGGCCR	2 cut(s)	228, 447
EciI	GGCGGA	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	222, 302
FaiI	YATR	5 cut(s)	220, 300, 444, 537, 539
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	2 cut(s)	218, 298
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	249, 380
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	249, 380
FspBI	CTAG	2 cut(s)	45, 78
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	249, 380
HaeIII	GGCC	3 cut(s)	132, 230, 449
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	222, 302
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188III	TCNNGA	2 cut(s)	192, 544
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	236, 314
HpyCH4V	TGCA	6 cut(s)	143, 148, 202, 251, 336, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	3 cut(s)	27, 393, 516
HpySE526I	ACGT	2 cut(s)	236, 314
Hsp92II	CATG	2 cut(s)	222, 302
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	208, 329, 417
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	6 cut(s)	114, 141, 177, 341, 346, 463
Lsp1109I	GCAGC	2 cut(s)	235, 391
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	45, 78
MaeII	ACGT	2 cut(s)	236, 314
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	210, 331, 419
MboI	GATC	3 cut(s)	208, 329, 417
MboII	GAAGA	2 cut(s)	281, 284
MflI	RGATCY	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	449
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	2 cut(s)	12, 531
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	3 cut(s)	208, 329, 417
NlaIII	CATG	2 cut(s)	222, 302
NmuCI	GTSAC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	250, 381
Psp6I	CCWGG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	2 cut(s)	152, 581
RsaNI	GTAC	2 cut(s)	151, 580
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	12, 531
SatI	GCNGC	2 cut(s)	249, 380
Sau3AI	GATC	3 cut(s)	208, 329, 417
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	8 cut(s)	83, 156, 239, 267, 317, 399, 404, 436
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	246, 359
SspMI	CTAG	2 cut(s)	45, 78
StyD4I	CCNGG	1 cut(s)	127
TaiI	ACGT	2 cut(s)	239, 317
TaqI	TCGA	2 cut(s)	18, 470
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	12, 531
Tru9I	TTAA	2 cut(s)	12, 531
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	248, 379
Tsp45I	GTSAC	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	2 cut(s)	45, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.