pycom04g01850

transport protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
1678324 .. 1679873
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGTGTGGCCTTGACAAGAGTACTTGCTTGACAGTTTTCTTTGATTTGTCATCTAGTGATCATTCAAATACACCGGGAACTGTAAATCCACAATTGTATCTGCAGTTTCTTACAAGTTTTCAAAACCCTGAAGGTCAAATGATGCTTCGAGTGACAACAATTACTAGACAATGGATAGATAGTTCAGTTAGCTCAGAGGAATTGGTTCAAGGATTTGACCAAGAGACTGCTGCTGTAGTAATGGCAAGAAAAACTTCCTTGAAAATGGAGTCAGAGGAATCTTTTGATGCTACACGATGGTTGGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

104

Amino Acids

11.65

Weight (kDa)

4.53

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_BS PF08033 1 - 58 1.6e-11 Sec23/Sec24 beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 22
AgsI TTSAA 4 cut(s) 66, 122, 209, 262
AloI GAACNNNNNNTCC 4 cut(s) 70, 102, 166, 198
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 218
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 2 cut(s) 204, 253
AsuC2I CCSGG 1 cut(s) 75
BaeI ACNNNNGTAYC 2 cut(s) 80, 113
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 291
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 54, 165
BfmI CTRYAG 2 cut(s) 101, 234
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 132, 277
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 307
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 58, 304
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 105
BssMI GATC 2 cut(s) 58, 304
Bst4CI ACNGT 2 cut(s) 34, 82
BstDEI CTNAG 1 cut(s) 193
BstKTI GATC 2 cut(s) 61, 307
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 58, 304
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 101, 234
BstV1I GCAGC 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 307
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 307
Csp6I GTAC 1 cut(s) 21
CviJI RGCY 2 cut(s) 9, 192
CviKI_1 RGCY 2 cut(s) 9, 192
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 60, 306
DpnII GATC 2 cut(s) 58, 304
Eco57I CTGAAG 1 cut(s) 150
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 54, 165
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 74
HinfI GANTC 2 cut(s) 269, 278
HpaII CCGG 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 196, 274
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 34, 82
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 304
LpnPI CCDG 2 cut(s) 87, 141
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 132, 277
MaeI CTAG 2 cut(s) 54, 165
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 60, 306
MboI GATC 2 cut(s) 58, 304
MfeI CAATTG 1 cut(s) 92
MluCI AATT 3 cut(s) 92, 159, 200
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 2 cut(s) 190, 268
MroXI GAANNNNTTC 2 cut(s) 204, 253
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 92
NciI CCSGG 1 cut(s) 75
NdeII GATC 2 cut(s) 58, 304
NmuCI GTSAC 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 204, 253
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 105
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 58, 304
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 75
SetI ASST 2 cut(s) 136, 194
SfaNI GCATC 2 cut(s) 132, 277
SfcI CTRYAG 2 cut(s) 101, 234
Sse9I AATT 3 cut(s) 92, 159, 200
SspMI CTAG 2 cut(s) 54, 165
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 34, 82
TaqI TCGA 2 cut(s) 148, 307
TasI AATT 3 cut(s) 92, 159, 200
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 1 cut(s) 278
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 151
XmnI GAANNNNTTC 2 cut(s) 204, 253
XspI CTAG 2 cut(s) 54, 165
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.