Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1705420 .. 1705962

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTCATCGGCACCAGCTCCTGTTGTTCATTTTTGCAAATATGTTGCCGTAGAACTGCGCGCCCTTCTTGTTGTACTCTCTCACTTTTTGAGGACCTTGTTATCTTTGGTAACATCAGAAACCGTCTTCCACGATACCAACTTGAGCGCTATCTCAAGGGTCGCATTTGGCAGCACAGCGCCTTCATCCCCTATAGCTGGCCTTCCCGCCTCGCCAAATCCATCTACAAAATTACAGCTGTTAAGTTTTCATCTTCATATGGGCACAGGACTCACATTGTGGCTTTACTGTCAAAGGACCTTTTCTCAAAAACCCGTCTCCTGGATGTTGTATACAATGCCTTAAACAATGAGCTTGTTAGAACACAAACTCGGGTGAAAAGCACCATTGTCCAGGTGGATGCAGCTCCATTTAAGCAATGGTACCTCCAGCATTATGGAGTTGAAATTGGCAGAAAGAAGAAGTCTGCTGTTGCTAAGAAGGATACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

165

Amino Acids

18.91

Weight (kDa)

10.07

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	94 - 139	1.2e-08	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	11, 423
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	76, 425
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	198, 322
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	321, 393
AluBI	AGCT	5 cut(s)	18, 198, 239, 355, 407
AluI	AGCT	5 cut(s)	18, 198, 239, 355, 407
Alw26I	GTCTC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	372
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	172, 404
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	4 cut(s)	61, 63, 150, 182
AspS9I	GGNCC	2 cut(s)	94, 298
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	94, 298
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	2 cut(s)	11, 423
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	184, 416
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	323, 395
BciVI	GTATCC	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	2 cut(s)	151, 183
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	2 cut(s)	173, 405
BlsI	GCNGC	2 cut(s)	174, 406
Bme1390I	CCNGG	2 cut(s)	323, 395
Bme18I	GGWCC	2 cut(s)	94, 298
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	94, 298
BmiI	GGNNCC	2 cut(s)	13, 425
BmrFI	CCNGG	2 cut(s)	323, 395
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	140, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 322
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	323, 395
BseGI	GGATG	3 cut(s)	186, 331, 406
BseLI	CCNNNNNNNGG	2 cut(s)	198, 322
BseMI	GCAATG	1 cut(s)	425
BsePI	GCGCGC	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	184, 416
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	11, 423
BsiHKCI	CYCGRG	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	198, 322
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	13, 425
BspT107I	GGYRCC	2 cut(s)	11, 423
BsrDI	GCAATG	1 cut(s)	425
BssHII	GCGCGC	1 cut(s)	59
BssNAI	GTATAC	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	323, 395
Bst4CI	ACNGT	2 cut(s)	125, 291
BstC8I	GCNNGC	2 cut(s)	61, 200
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	186, 331, 406
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	2 cut(s)	151, 183
BstHHI	GCGC	4 cut(s)	61, 63, 150, 182
BstMAI	GTCTC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	323, 395
BstSCI	CCNGG	2 cut(s)	321, 393
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	184, 416
BstV2I	GAAGAC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	186, 331, 406
Cac8I	GCNNGC	2 cut(s)	61, 200
CaiI	CAGNNNCTG	1 cut(s)	21
CfoI	GCGC	4 cut(s)	61, 63, 150, 182
Cfr13I	GGNCC	2 cut(s)	94, 298
Csp6I	GTAC	2 cut(s)	75, 424
CviJI	RGCY	7 cut(s)	18, 198, 202, 239, 284, 355, 407
CviKI_1	RGCY	7 cut(s)	18, 198, 202, 239, 284, 355, 407
CviQI	GTAC	2 cut(s)	75, 424
DdeI	CTNAG	1 cut(s)	477
DraIII	CACNNNGTG	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	94, 298
Eco47III	AGCGCT	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	372
EcoO109I	RGGNCCY	2 cut(s)	94, 298
EcoRII	CCWGG	2 cut(s)	321, 393
Esp3I	CGTCTC	1 cut(s)	323
FaiI	YATR	7 cut(s)	43, 195, 259, 261, 334, 438, 493
FauI	CCCGC	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	173, 405
FokI	GGATG	3 cut(s)	173, 338, 413
Fsp4HI	GCNGC	2 cut(s)	173, 405
GlaI	GCGC	4 cut(s)	60, 62, 149, 181
GluI	GCNGC	2 cut(s)	173, 405
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	2 cut(s)	151, 183
HaeIII	GGCC	1 cut(s)	202
HhaI	GCGC	4 cut(s)	61, 63, 150, 182
Hin6I	GCGC	4 cut(s)	59, 61, 148, 180
HinP1I	GCGC	4 cut(s)	59, 61, 148, 180
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	4 cut(s)	75, 193, 213, 475
HpyCH4III	ACNGT	2 cut(s)	125, 291
HpyCH4V	TGCA	2 cut(s)	37, 404
HpyF3I	CTNAG	1 cut(s)	477
HspAI	GCGC	4 cut(s)	59, 61, 148, 180
KpnI	GGTACC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	23, 412
LpnPI	CCDG	9 cut(s)	28, 34, 184, 253, 308, 335, 380, 407, 443
Lsp1109I	GCAGC	2 cut(s)	184, 416
LweI	GCATC	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	3 cut(s)	119, 246, 472
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	231, 447
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	85, 221, 437
MseI	TTAA	3 cut(s)	243, 344, 414
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	323, 395
MvaI	CCWGG	2 cut(s)	323, 395
MvnI	CGCG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	13, 425
PauI	GCGCGC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	174, 406
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	2 cut(s)	94, 298
Psp5II	RGGWCCY	2 cut(s)	94, 298
Psp6I	CCWGG	2 cut(s)	321, 393
PspGI	CCWGG	2 cut(s)	321, 393
PspN4I	GGNNCC	2 cut(s)	13, 425
PspPI	GGNCC	2 cut(s)	94, 298
PspPPI	RGGWCCY	2 cut(s)	94, 298
PstNI	CAGNNNCTG	1 cut(s)	21
PteI	GCGCGC	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	76, 425
RsaNI	GTAC	2 cut(s)	75, 424
SaqAI	TTAA	3 cut(s)	243, 344, 414
SatI	GCNGC	2 cut(s)	173, 405
Sau96I	GGNCC	2 cut(s)	94, 298
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	323, 395
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	20, 99, 200, 241, 303, 357, 399, 409, 429
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	94, 298
SmlI	CTYRAG	2 cut(s)	143, 155
SmoI	CTYRAG	2 cut(s)	143, 155
Sse9I	AATT	2 cut(s)	231, 447
SsiI	CCGC	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	321, 393
TaaI	ACNGT	2 cut(s)	125, 291
TasI	AATT	2 cut(s)	231, 447
TatI	WGTACW	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	243, 344, 414
Tru9I	TTAA	3 cut(s)	243, 344, 414
TseI	GCWGC	2 cut(s)	172, 404
TspDTI	ATGAA	4 cut(s)	18, 175, 240, 246
VpaK11BI	GGWCC	2 cut(s)	94, 298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	394, 417
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.