Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2893134 .. 2896024

Gene Structure 2891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAATCGCTTAATCTGGTTACATTCCAACAGAGAGAAAGTGGGGGACAAATTTACCAAAAAGAAAGGAAAAAAAAGAAGGAAAATAGGAGGGGAGGATATATCCCTGATCTATCTGTCCATCCGAGCAGTTCGTTGATTTGCCTCGCCAGTCGGCCACTCCGCGTTGCCTCTCTGTCTTTTCTCTCTCTTTTTCTTATTTCTCTGTCTCTCTGTCTCTCTCTAAAACAAACCCATCCTCTCAAGTCTCTCTCTCCCCTCCCAAAAAGCAACAGCCGAAGCCCCCTTTCAAATCCTACCTGTCGCTTTACCTTCACAAACCCTAAAAGAGACAGAAGAGAGAGAGAAGCGCAGAAGAAACTGAGAGAGGCGCAGAGAGAGAGAGAGAGAGAGCAAAGTAATGATGCTGAATCCACTCATATCATTGTGGCACAACAGGCACATGCTCCTCCCCCAGGTTGGTTTGTACGATTAGAGAATACAAGTGCTGAAGACGATTTGTATTTGCGGAAGAAAGTCAGGATGCGCAGGTGGCTCTGTTGTGCTTGTCACGTCGAAGAGTCTTATCCATCAAACGAAAATGAACGCCTGAAGAGCCCAAATCACTATGGAGATGGGAACCAAAAGGGATCTAAGGTGTCAGCTCCTGTAAAATCTGAAGTACAGAAGGCTGCTCCACCTATTGAAGTGCCTCAATTATCTGTGGAGGAGCTGAAAGAGAAGACTGACAATTTTGGATCCAAATCATTGATTGGTGAAGGTTCATATGGGAGAGTATATTATGCAAGCTTGAATGATGGTAAAGCTGTGGCCGTGAAGAAACTTGATGTTGCATCTGAACCTGAGACAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTTTCAAGACTGAAGCACGAAAATCTTGTTGAGTTGCTTGGTTACTGTGTTGATGGAAATCTGCGCGTTCTGGCTTATGAGTTTGCAACCATGGGATCGATCTACACGACATATTACATGGTAGAAAGGGAGTTCAGGGGGCTCAACCTGGTCCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.28

Weight (kDa)

9.35

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	248 - 329	2.9e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	249 - 329	4e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	519
Acc16I	TGCGCA	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	519
AccII	CGCG	2 cut(s)	165, 945
AciI	CCGC	2 cut(s)	163, 508
AclWI	GGATC	4 cut(s)	637, 732, 745, 982
AcoI	YGGCCR	2 cut(s)	155, 810
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	4 cut(s)	510, 611, 678, 911
AfaI	GTAC	2 cut(s)	468, 663
AfiI	CCNNNNNNNGG	2 cut(s)	455, 459
AgsI	TTSAA	4 cut(s)	291, 686, 793, 885
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	454, 867, 1026
AluBI	AGCT	4 cut(s)	644, 712, 789, 806
AluI	AGCT	4 cut(s)	644, 712, 789, 806
Alw26I	GTCTC	5 cut(s)	213, 221, 252, 324, 839
AlwI	GGATC	4 cut(s)	637, 732, 745, 982
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	155, 810
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	4 cut(s)	352, 373, 528, 945
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	1030
BamHI	GGATCC	1 cut(s)	737
BanII	GRGCYC	2 cut(s)	599, 1023
BbsI	GAAGAC	2 cut(s)	498, 728
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	6 cut(s)	129, 243, 577, 608, 791, 926
BceAI	ACGGC	1 cut(s)	797
BciT130I	CCWGG	3 cut(s)	456, 869, 1028
BcoDI	GTCTC	5 cut(s)	213, 221, 252, 324, 839
BfaI	CTAG	1 cut(s)	1039
BfuAI	ACCTGC	1 cut(s)	519
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	3 cut(s)	456, 869, 1028
Bme18I	GGWCC	1 cut(s)	1030
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	2 cut(s)	620, 739
BmrFI	CCNGG	3 cut(s)	456, 869, 1028
BmsI	GCATC	3 cut(s)	394, 513, 842
BpiI	GAAGAC	2 cut(s)	498, 728
BpuEI	CTTGAG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	977
BsaBI	GATNNNNATC	2 cut(s)	742, 936
BsaJI	CCNNGG	4 cut(s)	454, 867, 876, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 459
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	2 cut(s)	742, 936
BseBI	CCWGG	3 cut(s)	456, 869, 1028
BseCI	ATCGAT	1 cut(s)	977
BseDI	CCNNGG	4 cut(s)	454, 867, 876, 969
BseGI	GGATG	3 cut(s)	121, 235, 528
BseJI	GATNNNNATC	2 cut(s)	742, 936
BseLI	CCNNNNNNNGG	2 cut(s)	455, 459
BseMII	CTCAG	2 cut(s)	353, 834
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	438, 722
BseXI	GCAGC	1 cut(s)	658
Bsh1236I	CGCG	2 cut(s)	165, 945
BshFI	GGCC	2 cut(s)	157, 812
BshVI	ATCGAT	1 cut(s)	977
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	455, 459
BsmAI	GTCTC	5 cut(s)	213, 221, 252, 324, 839
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	157, 812
Bsp1286I	GDGCHC	2 cut(s)	599, 1023
Bsp143I	GATC	5 cut(s)	109, 629, 737, 974, 978
Bsp19I	CCATGG	2 cut(s)	876, 969
BspACI	CCGC	2 cut(s)	163, 508
BspANI	GGCC	2 cut(s)	157, 812
BspCNI	CTCAG	2 cut(s)	354, 835
BspDI	ATCGAT	1 cut(s)	977
BspFNI	CGCG	2 cut(s)	165, 945
BspLI	GGNNCC	2 cut(s)	620, 739
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	4 cut(s)	637, 732, 745, 982
BspQI	GCTCTTC	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	454, 867, 876, 969
BssMI	GATC	5 cut(s)	109, 629, 737, 974, 978
BssT1I	CCWWGG	2 cut(s)	876, 969
Bst2UI	CCWGG	3 cut(s)	456, 869, 1028
Bst4CI	ACNGT	1 cut(s)	926
Bst6I	CTCTTC	3 cut(s)	331, 552, 587
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	3 cut(s)	362, 633, 843
BstDSI	CCRYGG	2 cut(s)	876, 969
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	121, 235, 528
BstFNI	CGCG	2 cut(s)	165, 945
BstHHI	GCGC	4 cut(s)	352, 373, 528, 945
BstKTI	GATC	5 cut(s)	112, 632, 740, 977, 981
BstMAI	GTCTC	5 cut(s)	213, 221, 252, 324, 839
BstMBI	GATC	5 cut(s)	109, 629, 737, 974, 978
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 532, 594
BstNI	CCWGG	3 cut(s)	456, 869, 1028
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	454, 867, 1026
BstUI	CGCG	2 cut(s)	165, 945
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	2 cut(s)	498, 728
BstX2I	RGATCY	2 cut(s)	629, 737
BstYI	RGATCY	2 cut(s)	629, 737
Bsu15I	ATCGAT	1 cut(s)	977
BsuRI	GGCC	2 cut(s)	157, 812
BsuTUI	ATCGAT	1 cut(s)	977
BtgI	CCRYGG	2 cut(s)	876, 969
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	3 cut(s)	121, 235, 528
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	4 cut(s)	352, 373, 528, 945
Cfr13I	GGNCC	1 cut(s)	1030
ClaI	ATCGAT	1 cut(s)	977
CsiI	ACCWGGT	1 cut(s)	1026
Csp6I	GTAC	2 cut(s)	467, 662
CviAII	CATG	4 cut(s)	443, 877, 970, 997
CviQI	GTAC	2 cut(s)	467, 662
DdeI	CTNAG	3 cut(s)	362, 633, 843
DpnI	GATC	5 cut(s)	111, 631, 739, 976, 980
DpnII	GATC	5 cut(s)	109, 629, 737, 974, 978
EaeI	YGGCCR	2 cut(s)	155, 810
Eam1104I	CTCTTC	3 cut(s)	331, 552, 587
EarI	CTCTTC	3 cut(s)	331, 552, 587
Eco130I	CCWWGG	2 cut(s)	876, 969
Eco24I	GRGCYC	2 cut(s)	599, 1023
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	4 cut(s)	510, 611, 678, 911
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	3 cut(s)	454, 867, 1026
EcoT14I	CCWWGG	2 cut(s)	876, 969
EcoT38I	GRGCYC	2 cut(s)	599, 1023
ErhI	CCWWGG	2 cut(s)	876, 969
FaeI	CATG	4 cut(s)	446, 880, 973, 1000
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	442, 876, 969, 996
FauNDI	CATATG	1 cut(s)	766
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	3 cut(s)	108, 222, 535
FriOI	GRGCYC	2 cut(s)	599, 1023
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	1 cut(s)	1039
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	4 cut(s)	351, 372, 527, 944
GluI	GCNGC	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	157, 812
HhaI	GCGC	4 cut(s)	352, 373, 528, 945
Hin1II	CATG	4 cut(s)	446, 880, 973, 1000
Hin6I	GCGC	4 cut(s)	350, 371, 526, 943
HinP1I	GCGC	4 cut(s)	350, 371, 526, 943
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	2 cut(s)	410, 560
HphI	GGTGA	1 cut(s)	767
Hpy188I	TCNGA	3 cut(s)	126, 658, 838
Hpy188III	TCNNGA	2 cut(s)	520, 885
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	4 cut(s)	73, 322, 661, 752
HpyCH4III	ACNGT	1 cut(s)	926
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	3 cut(s)	785, 833, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 532, 594
HpyF3I	CTNAG	3 cut(s)	362, 633, 843
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	4 cut(s)	446, 880, 973, 1000
HspAI	GCGC	4 cut(s)	350, 371, 526, 943
Kzo9I	GATC	5 cut(s)	109, 629, 737, 974, 978
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	4 cut(s)	451, 649, 679, 709
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	3 cut(s)	394, 513, 842
MabI	ACCWGGT	1 cut(s)	1026
MaeI	CTAG	1 cut(s)	1039
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	19, 548, 920
MalI	GATC	5 cut(s)	111, 631, 739, 976, 980
MboI	GATC	5 cut(s)	109, 629, 737, 974, 978
MboII	GAAGA	8 cut(s)	348, 367, 503, 523, 569, 604, 733, 829
MflI	RGATCY	2 cut(s)	629, 737
MhlI	GDGCHC	2 cut(s)	599, 1023
MluCI	AATT	3 cut(s)	51, 695, 730
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	52
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	456, 869, 1028
MvaI	CCWGG	3 cut(s)	456, 869, 1028
MvnI	CGCG	2 cut(s)	165, 945
MwoI	GCNNNNNNNGC	3 cut(s)	437, 532, 594
NcoI	CCATGG	2 cut(s)	876, 969
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	5 cut(s)	109, 629, 737, 974, 978
NlaIII	CATG	4 cut(s)	446, 880, 973, 1000
NlaIV	GGNNCC	2 cut(s)	620, 739
NmuCI	GTSAC	1 cut(s)	548
NsbI	TGCGCA	1 cut(s)	527
NspI	RCATGY	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	454, 867, 1026
PspGI	CCWGG	3 cut(s)	454, 867, 1026
PspN4I	GGNNCC	2 cut(s)	620, 739
PspPI	GGNCC	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	629, 737
RsaI	GTAC	2 cut(s)	468, 663
RsaNI	GTAC	2 cut(s)	467, 662
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	5 cut(s)	109, 629, 737, 974, 978
Sau96I	GGNCC	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	456, 869, 1028
SduI	GDGCHC	2 cut(s)	599, 1023
SexAI	ACCWGGT	1 cut(s)	1026
SfaNI	GCATC	3 cut(s)	394, 513, 842
SinI	GGWCC	1 cut(s)	1030
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	51, 695, 730
SsiI	CCGC	2 cut(s)	163, 508
SspMI	CTAG	1 cut(s)	1039
StyD4I	CCNGG	3 cut(s)	454, 867, 1026
StyI	CCWWGG	2 cut(s)	876, 969
TaaI	ACNGT	1 cut(s)	926
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	555, 977
TasI	AATT	3 cut(s)	51, 695, 730
TatI	WGTACW	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	17, 597, 753
VpaK11BI	GGWCC	1 cut(s)	1030
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.