Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3191938 .. 3193135

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCAAGCACAAACCATATTGAACTGACTACAATGTCAAGCACAAACCATATTGAACTGAACCCCAGTGATGCAGGCTTTCAGGACAGATATATTGTCCAAGAGATAATTAAAGAAATGGCTAAAAATAGGCCCATTGACACAAAAGGGAAAAAAGTATACAAAATCTTAGTGCTGAATGAAGTTGACAAGCTTTCAAGAGAAGCGCAGCATTCTCTTCGAAGAACTATGGAGAAATATAGTGCTTATTGCCGGCTAATACTATGCTGTAACAGTTCTTCAAAGGTTACTGAAACAATCCGGTCTCGGTGTCTAAATGTGCGAATAAATGCGCCAACAGAAGACCAGATTGTTAAGGTATTGGAGTTCATTGGAAAGAAGGAAGCGCTGCAACTTCCTTCTGGATTCGCTGCTCGTATAGCTGAAAAATCAAATAGGAGCTTAAGGAGAGCTATATTGTCATTAGAAACTTGTTGCGTTCAACAGTATCCCTTAACAAGTAACCAAGCGATTCCCCCATTGGACTGGGAGGAATATGTTTCTGAAATCGCCTCTGATATAATGAAGGAGCAGAGCCCAAAAAGGTTTGGCTCTTACAATATTGACATCTATTGCAGCATTTTGTCTGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

212

Amino Acids

24.04

Weight (kDa)

8.63

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	31 - 111	7.2e-10	DNA polymerase III, delta subunit
RCF1-5-like_lid	PF21960	119 - 159	9.6e-11	RCF1/5-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	387
AflII	CTTAAG	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	23, 56, 198, 282, 482
AluBI	AGCT	4 cut(s)	193, 422, 441, 452
AluI	AGCT	4 cut(s)	193, 422, 441, 452
Alw26I	GTCTC	1 cut(s)	309
Aor51HI	AGCGCT	1 cut(s)	387
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	4 cut(s)	208, 388, 410, 615
AspLEI	GCGC	3 cut(s)	208, 334, 388
AspS9I	GGNCC	1 cut(s)	132
AsuII	TTCGAA	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	578
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	220, 375, 397, 627
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	389
BfrI	CTTAAG	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	4 cut(s)	209, 389, 411, 616
BlsI	GCNGC	4 cut(s)	210, 390, 412, 617
BmgT120I	GGNCC	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	60, 535
BmsI	GCATC	1 cut(s)	61
BmuI	ACTGGG	2 cut(s)	60, 535
BpiI	GAAGAC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	66, 530
BseNI	ACTGG	2 cut(s)	66, 530
BseXI	GCAGC	4 cut(s)	220, 375, 397, 627
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	253, 301
BsmAI	GTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	578
BspANI	GGCC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	66, 530
BssAI	RCCGGY	1 cut(s)	252
BssNAI	GTATAC	1 cut(s)	160
Bst1107I	GTATAC	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	275, 486
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	442
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	76, 254
BstDEI	CTNAG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	3 cut(s)	208, 334, 388
BstMAI	GTCTC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	220, 375, 397, 627
BstV2I	GAAGAC	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstZ17I	GTATAC	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	76, 254
CfoI	GCGC	3 cut(s)	208, 334, 388
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	578
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	209, 389, 411, 616
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	209, 389, 411, 616
GlaI	GCGC	3 cut(s)	207, 333, 387
GluI	GCNGC	4 cut(s)	209, 389, 411, 616
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	253, 301
HhaI	GCGC	3 cut(s)	208, 334, 388
Hin6I	GCGC	3 cut(s)	206, 332, 386
HinP1I	GCGC	3 cut(s)	206, 332, 386
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	405, 511
HpaII	CCGG	2 cut(s)	253, 301
Hpy166II	GTNNAC	2 cut(s)	160, 187
Hpy188I	TCNGA	2 cut(s)	544, 556
Hpy188III	TCNNGA	3 cut(s)	83, 198, 402
Hpy8I	GTNNAC	2 cut(s)	160, 187
HpyAV	CCTTC	3 cut(s)	373, 408, 559
HpyCH4III	ACNGT	2 cut(s)	275, 486
HpyCH4V	TGCA	3 cut(s)	74, 391, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	169
HspAI	GCGC	3 cut(s)	206, 332, 386
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	438, 568
LpnPI	CCDG	8 cut(s)	60, 68, 79, 266, 314, 359, 387, 511
Lsp1109I	GCAGC	4 cut(s)	220, 375, 397, 627
LweI	GCATC	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	269, 286, 500
MboII	GAAGA	4 cut(s)	209, 234, 270, 353
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	2 cut(s)	523, 562
MroNI	GCCGGC	1 cut(s)	252
MseI	TTAA	4 cut(s)	111, 354, 443, 494
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	2 cut(s)	253, 301
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	419
NaeI	GCCGGC	1 cut(s)	254
NgoMIV	GCCGGC	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	405, 511
PkrI	GCNGC	4 cut(s)	210, 390, 412, 617
PspPI	GGNCC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	111, 354, 443, 494
SatI	GCNGC	4 cut(s)	209, 389, 411, 616
Sau96I	GGNCC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	7 cut(s)	195, 288, 360, 424, 443, 454, 587
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	1 cut(s)	108
SspI	AATATT	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	275, 486
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	405, 511
Tru1I	TTAA	4 cut(s)	111, 354, 443, 494
Tru9I	TTAA	4 cut(s)	111, 354, 443, 494
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	4 cut(s)	208, 388, 410, 615
TspDTI	ATGAA	3 cut(s)	195, 358, 578
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.