pycom04g03630

Replication factor C subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
3271335 .. 3275713
4379 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGCGCCAACAGAAGACCAGTGTTAAGATATTGGAGTTCATTGGAAAGAAGGAAGCGCTGCAACTTCCTTCTGGATTCACTGCTCGTATAGCTGAAAAATCAAATAGGAGCTTAAGGAGAGCTATATTGTCAATAGAAACTTGTCGTGTCCAACAGTATCCCTTTACAAGTAACCAATCAATACCCCCAATGGACTGGGAGGAATATGTTTCTGAAATCGCCTCTGATATAATGAAGGAGCAGAGCCCAAAAAGGCTTTATCAGGTGCGGCAGAAGCTGTATGAGCTACTTCTAAATTGTATTCCTCCACAGATCATCTTGAAGAGGCTGCTTTGTGAGTTATTGAAGAAATTGGATGCAGAACTGAAGCATGAGGTCTGCCATTGGGCTGCATATTACGAACACAGGATGCGTCTTGGGCAGAAAGCAATATTTCACCTTGAAGCATTCGTGGCGAAGTTCATGAGCATCTATAAGGCTTTTCTCATTGAAGCGTTTGGCTGA

Protein Analysis

168

Amino Acids

19.64

Weight (kDa)

9.37

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 9 - 49 1.5e-09 RCF1/5-like, AAA+ ATPase lid domain
RFC_C PF22534 66 - 155 1.5e-32 Replication factor C subunit 3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 386
AfeI AGCGCT 1 cut(s) 57
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 4 cut(s) 322, 346, 443, 491
AluBI AGCT 5 cut(s) 92, 111, 122, 277, 286
AluI AGCT 5 cut(s) 92, 111, 122, 277, 286
AlwNI CAGNNNCTG 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 58, 328, 389
AspLEI GCGC 2 cut(s) 6, 58
AsuHPI GGTGA 1 cut(s) 428
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 45, 315, 376
BciVI GTATCC 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 112
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 4 cut(s) 59, 269, 329, 390
BlsI GCNGC 4 cut(s) 60, 270, 330, 391
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 346, 399, 477
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 18, 200
BseGI GGATG 2 cut(s) 361, 414
BseNI ACTGG 2 cut(s) 18, 200
BseXI GCAGC 3 cut(s) 45, 315, 376
BsmI GAATGC 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 1 cut(s) 268
BspHI TCATGA 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 112
BsrI ACTGG 2 cut(s) 18, 200
BssMI GATC 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 317
BstAFI CTTAAG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 361, 414
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 6, 58
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 5 cut(s) 89, 274, 283, 418, 452
BstV1I GCAGC 3 cut(s) 45, 315, 376
BstV2I GAAGAC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 361, 414
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 25, 78
CaiI CAGNNNCTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 6, 58
CseI GACGC 1 cut(s) 401
CviAII CATG 2 cut(s) 371, 463
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 248
Eco47III AGCGCT 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 248
FaeI CATG 2 cut(s) 374, 466
FaiI YATR 9 cut(s) 89, 125, 207, 230, 282, 372, 394, 464, 474
FatI CATG 2 cut(s) 370, 462
Fnu4HI GCNGC 4 cut(s) 59, 269, 329, 390
FokI GGATG 2 cut(s) 368, 421
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 4 cut(s) 59, 269, 329, 390
GlaI GCGC 2 cut(s) 5, 57
GluI GCNGC 4 cut(s) 59, 269, 329, 390
HaeII RGCGCY 1 cut(s) 59
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 6, 58
Hin1II CATG 2 cut(s) 374, 466
Hin6I GCGC 2 cut(s) 4, 56
HinP1I GCGC 2 cut(s) 4, 56
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 214, 226
Hpy188III TCNNGA 3 cut(s) 72, 319, 463
HpyAV CCTTC 3 cut(s) 43, 78, 229
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 61, 359, 392
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 274, 283, 418, 452
Hsp92II CATG 2 cut(s) 374, 466
HspAI GCGC 2 cut(s) 4, 56
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 108, 238
LpnPI CCDG 5 cut(s) 31, 57, 181, 248, 391
Lsp1109I GCAGC 3 cut(s) 45, 315, 376
LweI GCATC 3 cut(s) 346, 399, 477
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 3 cut(s) 25, 334, 358
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 295, 350
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 5 cut(s) 193, 232, 315, 318, 367
MseI TTAA 2 cut(s) 24, 113
MspCI CTTAAG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 446
MwoI GCNNNNNNNGC 5 cut(s) 89, 274, 283, 418, 452
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 374, 466
PagI TCATGA 1 cut(s) 462
PctI GAATGC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 4 cut(s) 60, 270, 330, 391
PstNI CAGNNNCTG 1 cut(s) 277
SaqAI TTAA 2 cut(s) 24, 113
SatI GCNGC 4 cut(s) 59, 269, 329, 390
Sau3AI GATC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 248
SetI ASST 8 cut(s) 94, 113, 124, 267, 279, 288, 378, 441
SfaNI GCATC 3 cut(s) 346, 399, 477
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 295, 350
SsiI CCGC 1 cut(s) 268
SspI AATATT 1 cut(s) 432
TaaI ACNGT 1 cut(s) 156
TasI AATT 2 cut(s) 295, 350
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 24, 113
Tru9I TTAA 2 cut(s) 24, 113
TscAI CASTG 2 cut(s) 25, 85
TseI GCWGC 3 cut(s) 58, 328, 389
TspDTI ATGAA 3 cut(s) 28, 248, 451
TspRI CASTG 2 cut(s) 25, 85
Vha464I CTTAAG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.