Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3987289 .. 3992331

Gene Structure 5043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTGCATACACACCTCAAGTAGGGTTGGATATGAGTTTGAAGGAGAAATTTTGGGAAGACCTTGGAGACTTGGTGCAAGGAATTGCTTAGACGCAGAAGGTATTAATAGGAGGAGATTTAAATGGACATGTGGGCAAGGAGACAGACAACTATGGAGCTTTTCATGGTGCTTGGATTTTGCAATGGCATACAATCTCTTCTTAGCCAACACCTTCTTTAAGAAGAGAGAAGAACATGTGATCACTACAAGAATGGACTCTTGTTCGTATAATATTATGTCGGCTTGTTATTTGCACAATTTTGACGTTGATTCTGCTTTGGAGTTCTTTCAGAAGATGCCTGTTAAGGACACGGCATCTTGGAATACTATGATATCGGGGTTTGCTCAAAACGGGACCTCTTTGGTTTGCATGTATTGTAAGTGTGGGAATTTGGAGGATGCTTGGAAGTTGTTTGTTGAGATGGAGGGGAAGGATATTGTTACTTGGAATGCAATGATTGCGGGTTATGCTCAGCACGGAGCAGGATTAGTAGATCTTGGGGTTCAGTATTTTGATTCAATGGGAAAGGATTATGTTCAAGCAAAGCCAGACCACTATACGTGTATGGTAGACCTTCTTGGTCGAGCAGCTGATCATGTTCAACTTGCTAATGTTTATGCGGCAACAAACAGATGGGAACATGTTGCGAAGGTCAGGCAATCGATGAAAGAAAATCGGGTAGTGAAGACACCTGGGTATAGTTGGATTGAGGTGCAGAGTGCAGTGCATGAGTTCAGATCAGGTGGTAGGGCACGCCCAGAATTGTTATCTATACGCGAAAGACTGTTGGAGCTGGATCGGAAAATGAAGGTAGAAGGGTATGTTCCGGATCTTGAATTTGCATTACATGATATTGGGGAAGAGCACAAACAGCAGCTTCTGTTATGGCACAGCGAAAAACTAGCAATTGAAAAAAGGGAAATCATAGCTAGAGATACCACAAGGTTTCATCATTTCAAAAATGGGGTTTGTTCTTGCGGAGATTACTGGTACATATGCAAAAGCACAGTAGCTCCAGTAGAAGTTTTTTTTTTTCCTGCAGCAGTCCATTCGACCGGCGATACTTGGAGTGCAAGCAAAGCGGTACTCCCATGGAAGTCGCAATTCATTACAAGACTTTTGCTCAATCAAATACTACACATACTTCTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

399

Amino Acids

45.79

Weight (kDa)

7.21

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	133 - 156	6.6e-06	PPR repeat
E_motif	PF20431	213 - 251	2.8e-10	E motif
DYW_deaminase	PF14432	287 - 317	1.9e-06	DYW family of nucleic acid deaminases
DYW_deaminase	PF14432	318 - 344	2.5e-10	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	1 cut(s)	819
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	4 cut(s)	503, 662, 1020, 1124
AclWI	GGATC	2 cut(s)	846, 879
AcsI	RAATTY	3 cut(s)	48, 430, 878
AfaI	GTAC	2 cut(s)	1034, 1128
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	4 cut(s)	128, 235, 602, 682
AgsI	TTSAA	7 cut(s)	41, 561, 581, 644, 878, 953, 1000
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	6 cut(s)	159, 632, 835, 919, 971, 1055
AluI	AGCT	6 cut(s)	159, 632, 835, 919, 971, 1055
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	2 cut(s)	61, 135
AlwI	GGATC	2 cut(s)	846, 879
AlwNI	CAGNNNCTG	1 cut(s)	922
Aor13HI	TCCGGA	1 cut(s)	868
ApeKI	GCWGC	3 cut(s)	629, 916, 1082
ApoI	RAATTY	3 cut(s)	48, 430, 878
AseI	ATTAAT	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	64, 734
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	641, 928, 1094
BccI	CCATC	2 cut(s)	457, 669
BceAI	ACGGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	1074, 1108
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	2 cut(s)	240, 634
BcoDI	GTCTC	2 cut(s)	61, 135
BfaI	CTAG	2 cut(s)	944, 972
BfmI	CTRYAG	1 cut(s)	1080
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	4 cut(s)	630, 663, 917, 1083
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	4 cut(s)	631, 664, 918, 1084
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	327, 365, 430
BpiI	GAAGAC	2 cut(s)	64, 734
BpmI	CTGGAG	1 cut(s)	1041
Bpu1102I	GCTNAGC	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	62, 734, 1133
BsaWI	WCCGGW	1 cut(s)	868
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 1039, 1069
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	1 cut(s)	1097
Bse1I	ACTGG	2 cut(s)	1034, 1058
Bse3DI	GCAATG	2 cut(s)	189, 501
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	3 cut(s)	62, 734, 1133
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMI	GCAATG	2 cut(s)	189, 501
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	1034, 1058
BseRI	GAGGAG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	3 cut(s)	641, 928, 1094
BsgI	GTGCAG	2 cut(s)	776, 783
Bsh1236I	CGCG	1 cut(s)	819
Bsh1285I	CGRYCG	1 cut(s)	1098
BshVI	ATCGAT	1 cut(s)	704
BsiEI	CGRYCG	1 cut(s)	1098
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	869, 1098
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	61, 135
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	796, 909
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	1133
BspACI	CCGC	4 cut(s)	503, 662, 1020, 1124
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	704
BspEI	TCCGGA	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	1 cut(s)	397
BspMAI	CTGCAG	1 cut(s)	1084
BspPI	GGATC	2 cut(s)	846, 879
BspQI	GCTCTTC	1 cut(s)	897
BsrDI	GCAATG	2 cut(s)	189, 501
BsrFI	RCCGGY	1 cut(s)	1097
BsrI	ACTGG	2 cut(s)	1034, 1058
BssAI	RCCGGY	1 cut(s)	1097
BssECI	CCNNGG	3 cut(s)	62, 734, 1133
BssMI	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
BssT1I	CCWWGG	2 cut(s)	62, 1133
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	828, 1051
Bst6I	CTCTTC	3 cut(s)	203, 218, 897
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	796, 1117
BstDEI	CTNAG	3 cut(s)	88, 202, 513
BstDSI	CCRYGG	1 cut(s)	1133
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	819
BstKTI	GATC	6 cut(s)	243, 538, 637, 782, 841, 874
BstMAI	GTCTC	2 cut(s)	61, 135
BstMBI	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
BstMCI	CGRYCG	1 cut(s)	1098
BstMWI	GCNNNNNNNGC	4 cut(s)	500, 509, 913, 1121
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	4 cut(s)	132, 239, 415, 686
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	1 cut(s)	1080
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	3 cut(s)	641, 928, 1094
BstV2I	GAAGAC	2 cut(s)	64, 734
BstX2I	RGATCY	2 cut(s)	535, 871
BstYI	RGATCY	2 cut(s)	535, 871
Bsu15I	ATCGAT	1 cut(s)	704
BsuTUI	ATCGAT	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	1133
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	796, 1117
CaiI	CAGNNNCTG	1 cut(s)	922
Cfr10I	RCCGGY	1 cut(s)	1097
Cfr13I	GGNCC	1 cut(s)	396
ClaI	ATCGAT	1 cut(s)	704
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	1033, 1127
CviAII	CATG	9 cut(s)	129, 165, 236, 412, 638, 683, 770, 890, 1134
CviJI	RGCY	9 cut(s)	159, 206, 284, 589, 632, 835, 919, 971, 1055
CviKI_1	RGCY	9 cut(s)	159, 206, 284, 589, 632, 835, 919, 971, 1055
CviQI	GTAC	2 cut(s)	1033, 1127
DdeI	CTNAG	3 cut(s)	88, 202, 513
DpnI	GATC	6 cut(s)	242, 537, 636, 781, 840, 873
DpnII	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	203, 218, 897
EarI	CTCTTC	3 cut(s)	203, 218, 897
Eco130I	CCWWGG	2 cut(s)	62, 1133
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	62, 1133
ErhI	CCWWGG	2 cut(s)	62, 1133
FaeI	CATG	9 cut(s)	132, 168, 239, 415, 641, 686, 773, 893, 1137
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	9 cut(s)	128, 164, 235, 411, 637, 682, 769, 889, 1133
FauI	CCCGC	1 cut(s)	496
FauNDI	CATATG	1 cut(s)	1037
FbaI	TGATCA	2 cut(s)	240, 634
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	630, 663, 917, 1083
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	4 cut(s)	630, 663, 917, 1083
FspBI	CTAG	2 cut(s)	944, 972
GluI	GCNGC	4 cut(s)	630, 663, 917, 1083
GsuI	CTGGAG	1 cut(s)	1041
HapII	CCGG	2 cut(s)	869, 1098
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	9 cut(s)	132, 168, 239, 415, 641, 686, 773, 893, 1137
HinfI	GANTC	3 cut(s)	257, 311, 557
HpaII	CCGG	2 cut(s)	869, 1098
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	3 cut(s)	333, 779, 843
Hpy188III	TCNNGA	2 cut(s)	869, 875
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	8 cut(s)	35, 92, 223, 466, 626, 685, 844, 851
HpyCH4III	ACNGT	2 cut(s)	828, 1051
HpyCH4IV	ACGT	2 cut(s)	306, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	500, 509, 913, 1121
HpyF3I	CTNAG	3 cut(s)	88, 202, 513
HpySE526I	ACGT	2 cut(s)	306, 602
Hsp92II	CATG	9 cut(s)	132, 168, 239, 415, 641, 686, 773, 893, 1137
Kpn2I	TCCGGA	1 cut(s)	868
Ksp22I	TGATCA	2 cut(s)	240, 634
Kzo9I	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	4 cut(s)	156, 521, 832, 1060
Lsp1109I	GCAGC	3 cut(s)	641, 928, 1094
LweI	GCATC	3 cut(s)	327, 365, 430
MaeI	CTAG	2 cut(s)	944, 972
MaeII	ACGT	2 cut(s)	306, 602
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	6 cut(s)	242, 537, 636, 781, 840, 873
MboI	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
MboII	GAAGA	7 cut(s)	69, 190, 235, 242, 346, 739, 914
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	2 cut(s)	535, 871
MhlI	GDGCHC	2 cut(s)	796, 909
MluCI	AATT	8 cut(s)	48, 82, 298, 430, 803, 878, 948, 1145
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	7, 725, 810
MnlI	CCTC	6 cut(s)	25, 105, 409, 430, 460, 745
MroI	TCCGGA	1 cut(s)	868
MseI	TTAA	4 cut(s)	105, 120, 219, 345
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	869, 1098
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	4 cut(s)	500, 509, 913, 1121
NcoI	CCATGG	1 cut(s)	1133
NdeI	CATATG	1 cut(s)	1037
NdeII	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
NlaIII	CATG	9 cut(s)	132, 168, 239, 415, 641, 686, 773, 893, 1137
NlaIV	GGNNCC	1 cut(s)	397
NspI	RCATGY	4 cut(s)	132, 239, 415, 686
PciI	ACATGT	3 cut(s)	128, 235, 682
PciSI	GCTCTTC	1 cut(s)	897
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	311, 557
PkrI	GCNGC	4 cut(s)	631, 664, 918, 1084
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	396
PscI	ACATGT	3 cut(s)	128, 235, 682
PshBI	ATTAAT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	535, 871
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	1034, 1128
RsaNI	GTAC	2 cut(s)	1033, 1127
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	4 cut(s)	105, 120, 219, 345
SatI	GCNGC	4 cut(s)	630, 663, 917, 1083
Sau3AI	GATC	6 cut(s)	240, 535, 634, 779, 838, 871
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	2 cut(s)	796, 909
SfaNI	GCATC	3 cut(s)	327, 365, 430
SfcI	CTRYAG	1 cut(s)	1080
SinI	GGWCC	1 cut(s)	396
SmiI	ATTTAAAT	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	8 cut(s)	48, 82, 298, 430, 803, 878, 948, 1145
SsiI	CCGC	4 cut(s)	503, 662, 1020, 1124
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	2 cut(s)	944, 972
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	62, 1133
SwaI	ATTTAAAT	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	828, 1051
TaiI	ACGT	2 cut(s)	309, 605
TaqI	TCGA	3 cut(s)	625, 704, 1094
TasI	AATT	8 cut(s)	48, 82, 298, 430, 803, 878, 948, 1145
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	2 cut(s)	311, 557
Tru1I	TTAA	4 cut(s)	105, 120, 219, 345
Tru9I	TTAA	4 cut(s)	105, 120, 219, 345
TscAI	CASTG	1 cut(s)	771
TseI	GCWGC	3 cut(s)	629, 916, 1082
TspDTI	ATGAA	5 cut(s)	153, 722, 863, 980, 1138
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	771
VpaK11BI	GGWCC	1 cut(s)	396
VspI	ATTAAT	1 cut(s)	105
XagI	CCTNNNNNAGG	1 cut(s)	19
XapI	RAATTY	3 cut(s)	48, 430, 878
XceI	RCATGY	4 cut(s)	132, 239, 415, 686
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	944, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.