pycom04g04810

Phospho-2-dehydro-3-deoxyheptonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
4459658 .. 4461107
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGCAAAGAGTCTCAGATTGGAATCTGGACTTCTTAGAACATAGTGAGCAAGGAAACAGGTTTATTTCTGGTTGCAACAAATTATTCCCGAATGAAGATAAGTACATGGAACTTGCACAGAGAGTAGATGAAGCTATTGGTTTTCTTGATGCTGCTGGGGCTACTAGTGACAATCCAATAATGAACACAGTGGAGTTTTGGGTATCTTATGAATGCCTTCATTTACTATACGAGCAGGCCTTGACTCGAGAGGATTCGACAATAGGACACTACTATGACTGTTCCGCACGCATGCTTTGGGTAGGCGAGAGGACTCGACAATTGGATGGAGCACATGTTGAATTCCTTCGAGGTGTATCCAACCCTCTTGGCATTAAGGTGAGTGATAAAATGGACCCAACAGAGCTTGTCAAATTGTGTGAAGTTTTGAACCCTCATAACAAACCTGGTAGACTGACAATAATTACCAGGATGGGGGCGGAAAATATGAGGAAAAAGCTCCCCCATTTGATTAGAGCTATGCGCCAGGCAGGGCTTATTGTCACGTGGTTCAGTGATCCCATGCACTGCAACACCATAAAGGCTCCATGTGGGCTTAATACACGACCATTTGATGATTGCAATCAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024
Pfam Domains
Protein Families
DAHP_synth_2

Protein Analysis

211

Amino Acids

23.96

Weight (kDa)

5.8

Isoelectric Point (pI)

27.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_2 PF01474 2 - 207 8.4e-71 Class-II DAHP synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 451
AciI CCGC 2 cut(s) 285, 479
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 341
AcvI CACGTG 1 cut(s) 546
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 2 cut(s) 341, 430
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 3 cut(s) 445, 467, 525
AluBI AGCT 4 cut(s) 134, 406, 499, 518
AluI AGCT 4 cut(s) 134, 406, 499, 518
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 2 cut(s) 216, 345
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 394
BbrPI CACGTG 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 320, 466
BciT130I CCWGG 3 cut(s) 447, 469, 527
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 447, 469, 527
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 396, 585
BmrFI CCNGG 3 cut(s) 447, 469, 527
BmsI GCATC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 546
BsaBI GATNNNNATC 2 cut(s) 21, 621
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse8I GATNNNNATC 2 cut(s) 21, 621
BseBI CCWGG 3 cut(s) 447, 469, 527
BseGI GGATG 2 cut(s) 331, 477
BseJI GATNNNNATC 2 cut(s) 21, 621
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 556
BspACI CCGC 2 cut(s) 285, 479
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 396, 585
BspPI GGATC 1 cut(s) 551
BssMI GATC 1 cut(s) 556
Bst2UI CCWGG 3 cut(s) 447, 469, 527
Bst4CI ACNGT 2 cut(s) 190, 281
BstBAI YACGTR 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 237, 289, 293
BstDEI CTNAG 2 cut(s) 13, 34
BstF5I GGATG 2 cut(s) 331, 477
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 556
BstMWI GCNNNNNNNGC 2 cut(s) 158, 627
BstNI CCWGG 3 cut(s) 447, 469, 527
BstNSI RCATGY 2 cut(s) 295, 338
BstSCI CCNGG 3 cut(s) 445, 467, 525
BstV1I GCAGC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 2 cut(s) 331, 477
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 195, 559, 565
Cac8I GCNNGC 3 cut(s) 237, 289, 293
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 394
CsiI ACCWGGT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 103
CviAII CATG 5 cut(s) 106, 292, 335, 562, 588
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 13, 34
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
EciI GGCGGA 1 cut(s) 494
Eco147I AGGCCT 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 394
Eco72I CACGTG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 445, 467, 525
FaeI CATG 5 cut(s) 109, 295, 338, 565, 591
FatI CATG 5 cut(s) 105, 291, 334, 561, 587
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 338, 484
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 524
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 1 cut(s) 525
Hin1II CATG 5 cut(s) 109, 295, 338, 565, 591
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 5 cut(s) 9, 22, 244, 254, 313
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 26, 88, 146, 248
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 2 cut(s) 227, 356
HpyCH4III ACNGT 2 cut(s) 190, 281
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 4, 75, 116, 565, 570, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 627
HpyF3I CTNAG 2 cut(s) 13, 34
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 5 cut(s) 109, 295, 338, 565, 591
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 3 cut(s) 329, 504, 589
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 139
MabI ACCWGGT 1 cut(s) 445
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 167, 541
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 1 cut(s) 107
MfeI CAATTG 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 5 cut(s) 80, 320, 341, 413, 462
MlyI GAGTC 3 cut(s) 18, 238, 307
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 6 cut(s) 244, 303, 344, 375, 444, 483
MroXI GAANNNNTTC 2 cut(s) 216, 345
MseI TTAA 2 cut(s) 375, 597
MslI CAYNNNNRTG 2 cut(s) 273, 377
MspR9I CCNGG 3 cut(s) 447, 469, 527
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 3 cut(s) 447, 469, 527
MwoI GCNNNNNNNGC 2 cut(s) 158, 627
NdeII GATC 1 cut(s) 556
NlaIII CATG 5 cut(s) 109, 295, 338, 565, 591
NlaIV GGNNCC 2 cut(s) 396, 585
NmuCI GTSAC 2 cut(s) 167, 541
NspI RCATGY 2 cut(s) 295, 338
PaeI GCATGC 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 246
PceI AGGCCT 1 cut(s) 239
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 218
PdmI GAANNNNTTC 2 cut(s) 216, 345
PfeI GAWTC 2 cut(s) 22, 254
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 3 cut(s) 17, 238, 307
PmaCI CACGTG 1 cut(s) 546
PmlI CACGTG 1 cut(s) 546
PpsI GAGTC 3 cut(s) 17, 238, 307
Ppu21I YACGTR 1 cut(s) 546
PscI ACATGT 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 445, 467, 525
PspCI CACGTG 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 3 cut(s) 445, 467, 525
PspN4I GGNNCC 2 cut(s) 396, 585
PspPI GGNCC 1 cut(s) 394
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 2 cut(s) 273, 377
SaqAI TTAA 2 cut(s) 375, 597
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 3 cut(s) 18, 238, 307
ScrFI CCNGG 3 cut(s) 447, 469, 527
SduI GDGCHC 1 cut(s) 334
SetI ASST 9 cut(s) 62, 136, 355, 381, 408, 448, 501, 520, 548
SexAI ACCWGGT 1 cut(s) 445
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 394
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 273, 377
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 295
Sse9I AATT 5 cut(s) 80, 320, 341, 413, 462
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 2 cut(s) 285, 479
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 445, 467, 525
TaaI ACNGT 2 cut(s) 190, 281
TaiI ACGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 247, 257, 316, 349
TasI AATT 5 cut(s) 80, 320, 341, 413, 462
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 2 cut(s) 22, 254
Tru1I TTAA 2 cut(s) 375, 597
Tru9I TTAA 2 cut(s) 375, 597
TscAI CASTG 3 cut(s) 195, 559, 572
TseFI GTSAC 2 cut(s) 167, 541
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 2 cut(s) 167, 541
TspDTI ATGAA 5 cut(s) 108, 144, 197, 209, 225
TspRI CASTG 3 cut(s) 195, 559, 572
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 341
XceI RCATGY 2 cut(s) 295, 338
XhoI CTCGAG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 451
XmnI GAANNNNTTC 2 cut(s) 216, 345
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.