Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4832215 .. 4835502

Gene Structure 3288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCTTCGGACGAAACCCCGTCGGCTAAGAGATGGCTTCCTCTCGAAGCTAACCCTGATGTTATGAATCAGTTCCTTTGGGGCCTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGATGTTTACGGATTGGATGGAGAACTCTTAGATATGGTTCCGAAGCCTGTACTTGCTGTCCTGTTTCTTTATCCTATAACCACTAAGACTGAAGAAGAGAGAATGATGCAGGCAAATGAAAAACAGGAATCCAAAGGTAATGTTTATTTTATGAAACAAACTGTGGGCAATGCTTGTGGAACAATTGGGCTTCTTCATGCTGTTGGAAACATCAATTCAGATCGATCAAACTTGTTGAGGATTCGTTCTTGGATAGGTTTTTCAAAAAAACTGCAAGCATGGATCCAATGCAGGCGTCCGACAATGCAGACACTCACTTTATTTGCTTTGCATGCGTGGACGGGGAACTTTATGAGCTTGATGGGAGGAAGTCAGGTCCAATCTCTCATGGTCCGTCTTCACCAAACAGTCTATTGCAGGATGCAGCTAAAGTCATACAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

189

Amino Acids

21.37

Weight (kDa)

7.67

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 116	1.2e-34	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	397, 410
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	415
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	98, 384
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	53, 477, 547
AluI	AGCT	3 cut(s)	53, 477, 547
AlwI	GGATC	2 cut(s)	397, 410
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	5, 544
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	85, 496, 511
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	496, 511
BamHI	GGATCC	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	86, 509
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	3 cut(s)	30, 131, 475
BciT130I	CCWGG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	6, 545
BlsI	GCNGC	2 cut(s)	7, 546
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	496, 511
BmgT120I	GGNCC	3 cut(s)	85, 496, 511
BmiI	GGNNCC	3 cut(s)	86, 159, 404
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	216, 531
BpiI	GAAGAC	2 cut(s)	86, 509
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	109, 142, 546
BseMI	GCAATG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	556
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	340, 344, 402
BspANI	GGCC	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	86, 159, 404
BspPI	GGATC	2 cut(s)	397, 410
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	340, 344, 402
BssNI	GRCGYC	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	283, 529
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	231, 396, 413, 453
BstDEI	CTNAG	3 cut(s)	30, 148, 204
BstF5I	GGATG	3 cut(s)	109, 142, 546
BstKTI	GATC	3 cut(s)	343, 347, 405
BstMBI	GATC	3 cut(s)	340, 344, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	2 cut(s)	86, 509
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	109, 142, 546
Cac8I	GCNNGC	4 cut(s)	231, 396, 413, 453
Cfr13I	GGNCC	3 cut(s)	85, 496, 511
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	5 cut(s)	317, 399, 452, 508, 564
CviJI	RGCY	9 cut(s)	5, 29, 40, 53, 87, 166, 310, 477, 547
CviKI_1	RGCY	9 cut(s)	5, 29, 40, 53, 87, 166, 310, 477, 547
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	30, 148, 204
DpnI	GATC	3 cut(s)	342, 346, 404
DpnII	GATC	3 cut(s)	340, 344, 402
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	496, 511
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	320, 402, 455, 511, 567
FatI	CATG	5 cut(s)	316, 398, 451, 507, 563
Fnu4HI	GCNGC	2 cut(s)	6, 545
FokI	GGATG	3 cut(s)	116, 149, 553
Fsp4HI	GCNGC	2 cut(s)	6, 545
GluI	GCNGC	2 cut(s)	6, 545
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	415
Hin1II	CATG	5 cut(s)	320, 402, 455, 511, 567
HinfI	GANTC	3 cut(s)	70, 248, 361
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	127, 459
Hpy188I	TCNGA	4 cut(s)	13, 162, 340, 420
Hpy188III	TCNNGA	2 cut(s)	47, 98
Hpy8I	GTNNAC	2 cut(s)	127, 459
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	283, 529
HpyCH4V	TGCA	7 cut(s)	229, 394, 411, 427, 451, 537, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	30, 148, 204
Hsp92I	GRCGYC	1 cut(s)	415
Hsp92II	CATG	5 cut(s)	320, 402, 455, 511, 567
Kzo9I	GATC	3 cut(s)	340, 344, 402
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	2 cut(s)	216, 531
MalI	GATC	3 cut(s)	342, 346, 404
MboI	GATC	3 cut(s)	340, 344, 402
MboII	GAAGA	5 cut(s)	86, 224, 227, 305, 509
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	2 cut(s)	303, 334
MmeI	TCCRAC	2 cut(s)	304, 443
MnlI	CCTC	5 cut(s)	54, 94, 100, 351, 479
MroXI	GAANNNNTTC	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	3 cut(s)	340, 344, 402
NlaIII	CATG	5 cut(s)	320, 402, 455, 511, 567
NlaIV	GGNNCC	3 cut(s)	86, 159, 404
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	70, 248, 361
PkrI	GCNGC	2 cut(s)	7, 546
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	86, 159, 404
PspPI	GGNCC	3 cut(s)	85, 496, 511
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	6, 545
Sau3AI	GATC	3 cut(s)	340, 344, 402
Sau96I	GGNCC	3 cut(s)	85, 496, 511
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	6 cut(s)	55, 259, 379, 479, 498, 549
SfaNI	GCATC	2 cut(s)	216, 531
SinI	GGWCC	2 cut(s)	496, 511
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	2 cut(s)	303, 334
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	283, 529
TaqI	TCGA	2 cut(s)	48, 343
TasI	AATT	2 cut(s)	303, 334
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	70, 248, 361
TseI	GCWGC	2 cut(s)	5, 544
TspDTI	ATGAA	4 cut(s)	83, 252, 287, 305
TspGWI	ACGGA	2 cut(s)	144, 503
VpaK11BI	GGWCC	2 cut(s)	496, 511
XceI	RCATGY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.