pycom04g05640

Agenet domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
5426640 .. 5427200
561 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGCCAGAGAAATTGATTATGTCTGTGTTTCCGATGCCTTCCACTGGCCACCTCAAAAAAGCAGATCAGGATTTGGAGCAGAGGGCAACTTTATCAGAGGAGACTCTTAGTAAAGTTAAGGAGGCCAGGCAACAGGCAGAAGAAGCTGCTGCTTACGCTGCTGCAGCTGTTAGTCACAGCCAAGAAATATGGGATCAGTCGGATAAGCAAAAAAATTCCAGATTGATATTAGACGTCGAAGCTAAGTTGGCATCTGCTGCTGCAGCTGTAGCTGCTGCGGCTGCTGTAGCGAAGGCAGCAGCTGCAGCTGCCAATGTTGCATCAAATGCTGCATTACAAGCAAAATTGATGGCTGAAGAAGCCTTGGTTTCATATAATGATGGTAATGCAAGCCAAAGTATAAGAATGGCTACTCCAGTGCCCATTTTAAGGGGTGAAGATGGAACAAATAGTTTTGGATTCCAACTTCGATCCTTGTTGCTGCTAGGGAGGCTGTTAGAAGGAGAGTTGAAGTTGCATCTGCAGCCTCAAAGCGAGCTGAAAATATGGATGCTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

19.86

Weight (kDa)

5.67

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AciI CCGC 1 cut(s) 278
AclWI GGATC 2 cut(s) 201, 465
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 44, 429
AgsI TTSAA 1 cut(s) 511
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 8 cut(s) 146, 167, 242, 266, 272, 302, 308, 538
AluI AGCT 8 cut(s) 146, 167, 242, 266, 272, 302, 308, 538
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 201, 465
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 2 cut(s) 46, 123
ApoI RAATTY 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 423
BalI TGGCCA 1 cut(s) 48
BccI CCATC 3 cut(s) 343, 374, 434
BciT130I CCWGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 6 cut(s) 162, 261, 267, 285, 303, 521
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 5 cut(s) 24, 260, 329, 526, 540
BpmI CTGGAG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 429
Bse1I ACTGG 2 cut(s) 49, 416
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 2 cut(s) 44, 429
BseNI ACTGG 2 cut(s) 49, 416
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 423
BshFI GGCC 2 cut(s) 48, 125
BslI CCNNNNNNNGG 2 cut(s) 44, 429
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 2 cut(s) 48, 125
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 64, 193, 470
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 48, 125
BspMAI CTGCAG 4 cut(s) 166, 265, 307, 525
BspPI GGATC 2 cut(s) 201, 465
BsrI ACTGG 2 cut(s) 49, 416
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 64, 193, 470
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 3 cut(s) 257, 302, 326
BstC8I GCNNGC 2 cut(s) 391, 536
BstDEI CTNAG 2 cut(s) 107, 243
BstF5I GGATG 1 cut(s) 555
BstKTI GATC 3 cut(s) 67, 196, 473
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 64, 193, 470
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 6 cut(s) 162, 261, 267, 285, 303, 521
BstSLI GKGCMC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 48, 125
BtsCI GGATG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 42, 423
Cac8I GCNNGC 2 cut(s) 391, 536
CaiI CAGNNNCTG 1 cut(s) 302
DdeI CTNAG 2 cut(s) 107, 243
DpnI GATC 3 cut(s) 66, 195, 472
DpnII GATC 3 cut(s) 64, 193, 470
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaiI YATR 6 cut(s) 20, 190, 373, 375, 401, 547
FspBI CTAG 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 48, 125
Hin1I GRCGYC 1 cut(s) 234
HinfI GANTC 2 cut(s) 103, 459
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 33, 97, 202
Hpy188III TCNNGA 2 cut(s) 68, 219
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 48, 286, 494
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 8 cut(s) 164, 263, 305, 320, 332, 389, 517, 523
HpyF3I CTNAG 2 cut(s) 107, 243
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 64, 193, 470
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 18, 30, 53, 112, 119, 139, 232, 429
LweI GCATC 5 cut(s) 24, 260, 329, 526, 540
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 66, 195, 472
MboI GATC 3 cut(s) 64, 193, 470
MboII GAAGA 3 cut(s) 152, 368, 449
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 11, 214, 344
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 180, 487
MnlI CCTC 6 cut(s) 62, 75, 91, 115, 483, 537
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 117, 428
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 4 cut(s) 167, 266, 302, 308
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
NdeII GATC 3 cut(s) 64, 193, 470
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 459
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PstI CTGCAG 4 cut(s) 166, 265, 307, 525
PstNI CAGNNNCTG 1 cut(s) 302
PvuII CAGCTG 4 cut(s) 167, 266, 302, 308
SaqAI TTAA 2 cut(s) 117, 428
Sau3AI GATC 3 cut(s) 64, 193, 470
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 5 cut(s) 24, 260, 329, 526, 540
SfcI CTRYAG 6 cut(s) 162, 261, 267, 285, 303, 521
Sse9I AATT 3 cut(s) 11, 214, 344
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 237, 469
TasI AATT 3 cut(s) 11, 214, 344
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 117, 428
Tru9I TTAA 2 cut(s) 117, 428
TscAI CASTG 2 cut(s) 49, 423
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 2 cut(s) 49, 423
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 485
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.