Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6208736 .. 6210667

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGAAAAAAGTGAAACACTATTCTCAACAAATTAAAGTTGGAGCAATAGACCGGAGGCACGTCCTAAAGGACTTTTCAAGAATGCTGGATAATCAGATTGAGACTATCGTCCTTTTCCTGTTGGAACAACAAGGACTACTTGCAAGTAGGATAGCCAAACTTGGAGAACAGCATGAAGCTCTTCAGCAGCAACCTGATCTATCCAAAATATCTGAACTACGAGAAGCTTATAGACAAGTGGGGCGTGATCTTCTGAAGCTTCTGTTTTTTGTTGAGGTGAATGCCATAGGTCTGCGTAAGATACTGAAGAAGTTCGATAAACGCTTTGGGTATAGATTTACTGACTACTACGTCAAAACTCGTGCGAATCATCCTTACTCACAGCTGCAGCAAGTGTTTAAGCATGTGGGCATAGGGGCTGTTGTAGGAGCTATATCTCGCAATCTTCATGAACTTCAGGACCGACAAGGAAGCTACTTATCAATATATGATCAGCCTGCTCTTCCCCTCCAGGATCCTGTCATTGACTCTGTAAAAGCAGCTGTGGACAGGTTAACCAATTCAACAAACTTTCTTAACTTTTTGGGACAACATGCACTTATTCTGCAAGACGATATGCTGCCTGCTCCAGTTGAGGAAGAAGTTGATGATCAGAGATACCACTTTATGTCACTTGTCTTAAACTTAGTAAACACGTTCCTTTACATGGTCAATACATATATTCTTGTACCTACAGCAGATGACTACTCCATGAGCCTTGGTGCTGCAGCAACAGTTTGTGGTGTTGTGATTGGAGCAATGGCTGTTGCACAGGTGTTTTCTTCAGTGTATTTTAGTGCATGGTCAAATCGGTCATACTTCAAGCCTCTTGTATTTAGCAGTATTGTTCTTTTTGCGGGAAACACCCTGTATGCTCTGGCTGATCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

312

Amino Acids

35.31

Weight (kDa)

8.94

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	77 - 121	1.5e-07	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AciI	CCGC	1 cut(s)	899
AclWI	GGATC	2 cut(s)	512, 525
AcuI	CTGAAG	5 cut(s)	170, 278, 329, 443, 810
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	81, 567, 865
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	7 cut(s)	182, 230, 262, 388, 434, 477, 545
AluI	AGCT	7 cut(s)	182, 230, 262, 388, 434, 477, 545
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	512, 525
ApeKI	GCWGC	7 cut(s)	190, 388, 391, 542, 622, 767, 770
Asp700I	GAANNNNTTC	2 cut(s)	183, 314
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	517
BauI	CACGAG	1 cut(s)	363
BbvI	GCAGC	7 cut(s)	202, 375, 403, 554, 609, 754, 782
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	2 cut(s)	493, 652
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	3 cut(s)	389, 735, 768
BisI	GCNGC	7 cut(s)	191, 389, 392, 543, 623, 768, 771
BlsI	GCNGC	7 cut(s)	192, 390, 393, 544, 624, 769, 772
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	515
BoxI	GACNNNNGTC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	497, 615
Bsa29I	ATCGAT	1 cut(s)	928
BsaJI	CCNNGG	1 cut(s)	760
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	928
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	807
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	7 cut(s)	202, 375, 403, 554, 609, 754, 782
BshVI	ATCGAT	1 cut(s)	928
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	603
BsmI	GAATGC	2 cut(s)	90, 289
Bsp143I	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
BspACI	CCGC	1 cut(s)	899
BspDI	ATCGAT	1 cut(s)	928
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	2 cut(s)	393, 772
BspPI	GGATC	2 cut(s)	512, 525
BspQI	GCTCTTC	2 cut(s)	189, 510
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	760
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	778
Bst6I	CTCTTC	2 cut(s)	189, 510
BstC8I	GCNNGC	2 cut(s)	501, 627
BstDEI	CTNAG	1 cut(s)	688
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	7 cut(s)	202, 253, 496, 520, 655, 928, 932
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	410, 599
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	3 cut(s)	389, 735, 768
BstV1I	GCAGC	7 cut(s)	202, 375, 403, 554, 609, 754, 782
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	928
BsuTUI	ATCGAT	1 cut(s)	928
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	834
Cac8I	GCNNGC	2 cut(s)	501, 627
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	928
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	7 cut(s)	176, 407, 452, 596, 709, 754, 843
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	1 cut(s)	688
DpnI	GATC	7 cut(s)	201, 252, 495, 519, 654, 927, 931
DpnII	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	189, 510
EarI	CTCTTC	2 cut(s)	189, 510
Eco130I	CCWWGG	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	5 cut(s)	170, 278, 329, 443, 810
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	7 cut(s)	179, 410, 455, 599, 712, 757, 846
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	7 cut(s)	175, 406, 451, 595, 708, 753, 842
FauI	CCCGC	1 cut(s)	892
FbaI	TGATCA	2 cut(s)	493, 652
Fnu4HI	GCNGC	7 cut(s)	191, 389, 392, 543, 623, 768, 771
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	7 cut(s)	191, 389, 392, 543, 623, 768, 771
GluI	GCNGC	7 cut(s)	191, 389, 392, 543, 623, 768, 771
GsuI	CTGGAG	2 cut(s)	497, 615
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	7 cut(s)	179, 410, 455, 599, 712, 757, 846
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HindIII	AAGCTT	2 cut(s)	228, 260
HinfI	GANTC	2 cut(s)	370, 530
HpaI	GTTAAC	1 cut(s)	558
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	550, 558, 694
Hpy188I	TCNGA	4 cut(s)	99, 217, 258, 657
Hpy188III	TCNNGA	3 cut(s)	81, 452, 461
Hpy8I	GTNNAC	3 cut(s)	550, 558, 694
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	3 cut(s)	63, 354, 698
HpyCH4V	TGCA	7 cut(s)	146, 391, 599, 610, 770, 812, 842
HpyF3I	CTNAG	1 cut(s)	688
HpySE526I	ACGT	3 cut(s)	63, 354, 698
Hsp92II	CATG	7 cut(s)	179, 410, 455, 599, 712, 757, 846
Ksp22I	TGATCA	2 cut(s)	493, 652
KspAI	GTTAAC	1 cut(s)	558
Kzo9I	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
LguI	GCTCTTC	2 cut(s)	189, 510
LmnI	GCTCC	4 cut(s)	44, 431, 634, 797
Lsp1109I	GCAGC	7 cut(s)	202, 375, 403, 554, 609, 754, 782
MaeII	ACGT	3 cut(s)	63, 354, 698
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	7 cut(s)	201, 252, 495, 519, 654, 927, 931
MboI	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
MboII	GAAGA	8 cut(s)	16, 176, 245, 322, 440, 497, 653, 816
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	2 cut(s)	33, 562
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	22, 105
MnlI	CCTC	5 cut(s)	51, 271, 521, 631, 879
MroXI	GAANNNNTTC	2 cut(s)	183, 314
MseI	TTAA	6 cut(s)	36, 402, 557, 579, 683, 934
MspA1I	CMGCKG	2 cut(s)	388, 545
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	515
Mva1269I	GAATGC	2 cut(s)	90, 289
MvaI	CCWGG	1 cut(s)	515
NdeII	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
NlaIII	CATG	7 cut(s)	179, 410, 455, 599, 712, 757, 846
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	2 cut(s)	410, 599
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	2 cut(s)	189, 510
PctI	GAATGC	2 cut(s)	90, 289
PdmI	GAANNNNTTC	2 cut(s)	183, 314
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	7 cut(s)	192, 390, 393, 544, 624, 769, 772
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	463
PstI	CTGCAG	2 cut(s)	393, 772
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	2 cut(s)	388, 545
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
SapI	GCTCTTC	2 cut(s)	189, 510
SaqAI	TTAA	6 cut(s)	36, 402, 557, 579, 683, 934
SatI	GCNGC	7 cut(s)	191, 389, 392, 543, 623, 768, 771
Sau3AI	GATC	7 cut(s)	199, 250, 493, 517, 652, 925, 929
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	515
SfcI	CTRYAG	3 cut(s)	389, 735, 768
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	33, 562
SsiI	CCGC	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	3 cut(s)	66, 357, 701
TaqI	TCGA	2 cut(s)	318, 928
TaqII	GACCGA	2 cut(s)	480, 843
TasI	AATT	2 cut(s)	33, 562
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	6 cut(s)	36, 402, 557, 579, 683, 934
Tru9I	TTAA	6 cut(s)	36, 402, 557, 579, 683, 934
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	7 cut(s)	190, 388, 391, 542, 622, 767, 770
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	4 cut(s)	17, 192, 440, 468
TspRI	CASTG	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	463
XceI	RCATGY	2 cut(s)	410, 599
XmnI	GAANNNNTTC	2 cut(s)	183, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.