pycom04g06320

rhamnose biosynthetic enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
6313038 .. 6314622
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGGTAAGGTTCTATAGGATACACCATCAGTGTCCGATACAGTCGCACTCGACCACTCCTCCTCTCGCGTTCCTTCTTTTTCTATTGCCTATATACACCACCCACACCCCTCATTCCATTTCTCACACAATCCCCAGATCCAAATCTCAAACACTCCTCAGCTCGCTCTCTCTCTCTCTGTGGTCTGTGGTTGTGGCACTGATGGGTTTCCCATCCAATGGCGCCCAGAAGCCGCTCAAGTTCCTGATCTACGGCCGGACGGGCTGGATAGGCGGCCTCCTCGGCAAGCTCTGCGAGGCCCAATCAATCGACTACGTCTACGGCTCCGGCCGCCTCGAGAATCGCAGCTCGCTCGAGGCCGACATCGCCAATATTAAGCCCACCCACGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAATCCCATAAGGTCGAGACCATCCGGACCAACGTGGTCGGCACCCTGACCCTCGCTGACGTATGCAGAGAGCGGGGGTTGGTCCTCATTAACTATGCGACCGGGTGCATTTTCGAGTACGATGCGGGTCACCCGCTCGGGTCCGGCGTCGGGTTCAAGGAGGAGGACACCCCCAACTTTATCGGATCTTTCTATTCCAAGACAAAGGCCATGGTGGAAGATCTGCTCAACAATTTCGAGAACGTTTGTACTTTGCGCGTTCGGATGCCGATTTCATCCGACTTATCCAACCCCCGTAACTTCATCACGAAGATCACTCGATACGAGAAGGTAGTCGACATTCCAAACTCCATGACAATCTTGGACGAACTCCTCCCCATTTCCATCGAGATGGCAAAGAGAAACCTCACCGGAATCTACAACTTCACAAACCCCGGAGTGGTCAGCCACAACGATCGATCTTGGAGATGTACAAGGAATACATTGACCCCAGCTTCACTTACAAGAACTTTACTCTTGAGGAGCAGGCAAAGGTGA

Protein Analysis

324

Amino Acids

36.12

Weight (kDa)

9.27

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 80 - 252 6e-14 RmlD substrate binding domain
Epimerase PF01370 82 - 244 4.8e-12 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 476
AccB7I CCANNNNNTGG 1 cut(s) 218
AccBSI CCGCTC 3 cut(s) 235, 508, 571
AccI GTMKAC 3 cut(s) 318, 426, 771
AccII CGCG 2 cut(s) 68, 693
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 8 cut(s) 233, 273, 331, 399, 415, 508, 560, 569
AclI AACGTT 1 cut(s) 678
AclWI GGATC 2 cut(s) 132, 628
AcoI YGGCCR 3 cut(s) 253, 328, 412
AcyI GRCGYC 3 cut(s) 222, 405, 582
AfaI GTAC 3 cut(s) 554, 685, 907
AfiI CCNNNNNNNGG 3 cut(s) 218, 585, 874
AgsI TTSAA 2 cut(s) 394, 592
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 4 cut(s) 162, 289, 348, 929
AluI AGCT 4 cut(s) 162, 289, 348, 929
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 2 cut(s) 132, 628
Ama87I CYCGRG 3 cut(s) 335, 353, 572
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 7 cut(s) 253, 274, 297, 328, 357, 412, 642
ApeKI GCWGC 1 cut(s) 345
AspLEI GCGC 2 cut(s) 224, 693
AspS9I GGNCC 4 cut(s) 298, 462, 517, 576
AsuC2I CCSGG 2 cut(s) 538, 870
AsuHPI GGTGA 3 cut(s) 400, 557, 835
AvaI CYCGRG 3 cut(s) 335, 353, 572
AvaII GGWCC 3 cut(s) 462, 517, 576
BanI GGYRCC 2 cut(s) 221, 476
BbsI GAAGAC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 357
BccI CCATC 6 cut(s) 33, 196, 220, 464, 820, 827
BceAI ACGGC 2 cut(s) 268, 337
BcgI CGANNNNNNTGC 4 cut(s) 334, 368, 539, 573
BciVI GTATCC 1 cut(s) 12
BcnI CCSGG 2 cut(s) 538, 870
BcoDI GTCTC 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 13
BfoI RGCGCY 1 cut(s) 225
BfuI GTATCC 1 cut(s) 12
BglI GCCNNNNNGGC 2 cut(s) 261, 282
BglII AGATCT 1 cut(s) 655
BisI GCNGC 6 cut(s) 233, 274, 331, 346, 399, 415
BlsI GCNGC 6 cut(s) 234, 275, 332, 347, 400, 416
Bme1390I CCNGG 2 cut(s) 538, 870
Bme18I GGWCC 3 cut(s) 462, 517, 576
BmeT110I CYCGRG 3 cut(s) 335, 353, 572
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 4 cut(s) 298, 462, 517, 576
BmiI GGNNCC 4 cut(s) 223, 325, 478, 577
BmrFI CCNGG 2 cut(s) 538, 870
BmsI GCATC 2 cut(s) 547, 690
BpiI GAAGAC 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 538, 870
Bsa29I ATCGAT 1 cut(s) 892
BsaBI GATNNNNATC 1 cut(s) 142
BsaHI GRCGYC 3 cut(s) 222, 405, 582
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 280, 645, 868
BsaWI WCCGGW 2 cut(s) 459, 845
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 585, 874
Bse118I RCCGGY 2 cut(s) 401, 410
Bse1I ACTGG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 459
BseCI ATCGAT 1 cut(s) 892
BseDI CCNNGG 3 cut(s) 280, 645, 868
BseGI GGATG 4 cut(s) 212, 456, 705, 710
BseJI GATNNNNATC 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 218, 585, 874
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 7 cut(s) 48, 51, 146, 269, 611, 797, 970
BseX3I CGGCCG 3 cut(s) 253, 328, 412
BseXI GCAGC 1 cut(s) 357
BseYI CCCAGC 1 cut(s) 925
Bsh1236I CGCG 2 cut(s) 68, 693
Bsh1285I CGRYCG 5 cut(s) 256, 331, 415, 537, 892
BshFI GGCC 7 cut(s) 255, 276, 299, 330, 359, 414, 644
BshNI GGYRCC 2 cut(s) 221, 476
BshVI ATCGAT 1 cut(s) 892
BsiEI CGRYCG 5 cut(s) 256, 331, 415, 537, 892
BsiHKCI CYCGRG 3 cut(s) 335, 353, 572
BsiSI CCGG 9 cut(s) 256, 327, 402, 411, 460, 537, 579, 846, 870
BslI CCNNNNNNNGG 3 cut(s) 218, 585, 874
BsmAI GTCTC 1 cut(s) 446
BsnI GGCC 7 cut(s) 255, 276, 299, 330, 359, 414, 644
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 3 cut(s) 335, 353, 572
Bsp13I TCCGGA 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 905
Bsp143I GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 8 cut(s) 233, 273, 331, 399, 415, 508, 560, 569
BspANI GGCC 7 cut(s) 255, 276, 299, 330, 359, 414, 644
BspCNI CTCAG 1 cut(s) 171
BspDI ATCGAT 1 cut(s) 892
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 2 cut(s) 68, 693
BspLI GGNNCC 4 cut(s) 223, 325, 478, 577
BspPI GGATC 2 cut(s) 132, 628
BspT107I GGYRCC 2 cut(s) 221, 476
BspTNI GGTCTC 1 cut(s) 446
BsrBI CCGCTC 3 cut(s) 235, 508, 571
BsrFI RCCGGY 2 cut(s) 401, 410
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 2 cut(s) 401, 410
BssECI CCNNGG 3 cut(s) 280, 645, 868
BssMI GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
BssNI GRCGYC 3 cut(s) 222, 405, 582
BssT1I CCWWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 42
BstACI GRCGYC 3 cut(s) 222, 405, 582
BstAPI GCANNNNNTGC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 905
BstC8I GCNNGC 5 cut(s) 164, 287, 350, 403, 962
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 645
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 4 cut(s) 212, 456, 705, 710
BstFNI CGCG 2 cut(s) 68, 693
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 693
BstKTI GATC 7 cut(s) 140, 249, 623, 658, 750, 892, 896
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
BstMCI CGRYCG 5 cut(s) 256, 331, 415, 537, 892
BstMWI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 330, 365, 411
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 536, 868
BstSFI CTRYAG 1 cut(s) 13
BstUI CGCG 2 cut(s) 68, 693
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 137, 620, 655
BstXI CCANNNNNNTGG 1 cut(s) 826
BstYI RGATCY 3 cut(s) 137, 620, 655
BstZI CGGCCG 3 cut(s) 253, 328, 412
Bsu15I ATCGAT 1 cut(s) 892
BsuI GTATCC 1 cut(s) 12
BsuRI GGCC 7 cut(s) 255, 276, 299, 330, 359, 414, 644
BsuTUI ATCGAT 1 cut(s) 892
BtgI CCRYGG 1 cut(s) 645
BtgZI GCGATG 1 cut(s) 349
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 4 cut(s) 212, 456, 705, 710
BtsIMutI CAGTG 2 cut(s) 35, 197
Cac8I GCNNGC 5 cut(s) 164, 287, 350, 403, 962
CfoI GCGC 2 cut(s) 224, 693
Cfr10I RCCGGY 2 cut(s) 401, 410
Cfr13I GGNCC 4 cut(s) 298, 462, 517, 576
ClaI ATCGAT 1 cut(s) 892
CseI GACGC 2 cut(s) 394, 571
Csp6I GTAC 3 cut(s) 553, 684, 906
CviAII CATG 2 cut(s) 646, 787
CviQI GTAC 3 cut(s) 553, 684, 906
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 1 cut(s) 223
DpnI GATC 7 cut(s) 139, 248, 622, 657, 749, 891, 895
DpnII GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
EaeI YGGCCR 3 cut(s) 253, 328, 412
EagI CGGCCG 3 cut(s) 253, 328, 412
EclXI CGGCCG 3 cut(s) 253, 328, 412
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 3 cut(s) 462, 517, 576
Eco52I CGGCCG 3 cut(s) 253, 328, 412
Eco88I CYCGRG 3 cut(s) 335, 353, 572
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoT14I CCWWGG 1 cut(s) 645
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 649, 790
FaiI YATR 8 cut(s) 15, 92, 94, 444, 499, 531, 647, 788
FatI CATG 2 cut(s) 645, 786
FauI CCCGC 3 cut(s) 501, 553, 576
FblI GTMKAC 3 cut(s) 318, 426, 771
Fnu4HI GCNGC 6 cut(s) 233, 274, 331, 346, 399, 415
FokI GGATG 4 cut(s) 199, 443, 697, 712
Fsp4HI GCNGC 6 cut(s) 233, 274, 331, 346, 399, 415
GlaI GCGC 2 cut(s) 223, 692
GluI GCNGC 6 cut(s) 233, 274, 331, 346, 399, 415
GsaI CCCAGC 1 cut(s) 929
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 7 cut(s) 255, 276, 299, 330, 359, 414, 644
HapII CCGG 9 cut(s) 256, 327, 402, 411, 460, 537, 579, 846, 870
HgaI GACGC 2 cut(s) 394, 571
HhaI GCGC 2 cut(s) 224, 693
Hin1I GRCGYC 3 cut(s) 222, 405, 582
Hin1II CATG 2 cut(s) 649, 790
Hin6I GCGC 2 cut(s) 222, 691
HinP1I GCGC 2 cut(s) 222, 691
HincII GTYRAC 2 cut(s) 427, 772
HindII GTYRAC 2 cut(s) 427, 772
HinfI GANTC 3 cut(s) 340, 437, 849
HpaII CCGG 9 cut(s) 256, 327, 402, 411, 460, 537, 579, 846, 870
HphI GGTGA 3 cut(s) 400, 557, 835
Hpy166II GTNNAC 3 cut(s) 319, 427, 772
Hpy188I TCNGA 4 cut(s) 36, 620, 699, 715
Hpy188III TCNNGA 8 cut(s) 244, 337, 451, 460, 673, 742, 823, 952
Hpy8I GTNNAC 3 cut(s) 319, 427, 772
Hpy99I CGWCG 2 cut(s) 428, 587
HpyAV CCTTC 2 cut(s) 83, 757
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 6 cut(s) 315, 387, 423, 468, 495, 678
HpyCH4V TGCA 2 cut(s) 501, 543
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 330, 365, 411
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 6 cut(s) 315, 387, 423, 468, 495, 678
Hsp92I GRCGYC 3 cut(s) 222, 405, 582
Hsp92II CATG 2 cut(s) 649, 790
HspAI GCGC 2 cut(s) 222, 691
KasI GGCGCC 1 cut(s) 221
Kpn2I TCCGGA 1 cut(s) 459
KroI GCCGGC 1 cut(s) 401
KroNI GCCGGC 1 cut(s) 403
Kzo9I GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
LmnI GCTCC 2 cut(s) 329, 957
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 2 cut(s) 547, 690
MaeII ACGT 6 cut(s) 315, 387, 423, 468, 495, 678
MaeIII GTNAC 3 cut(s) 406, 563, 731
MalI GATC 7 cut(s) 139, 248, 622, 657, 749, 891, 895
MbiI CCGCTC 3 cut(s) 235, 508, 571
MboI GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
MboII GAAGA 3 cut(s) 382, 665, 757
MflI RGATCY 3 cut(s) 137, 620, 655
MluCI AATT 1 cut(s) 667
Mly113I GGCGCC 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 738, 747
MreI CGCCGGCG 1 cut(s) 401
MroI TCCGGA 1 cut(s) 459
MroNI GCCGGC 1 cut(s) 401
MseI TTAA 2 cut(s) 375, 525
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 9 cut(s) 256, 327, 402, 411, 460, 537, 579, 846, 870
MspR9I CCNGG 2 cut(s) 538, 870
MvnI CGCG 2 cut(s) 68, 693
MwoI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 330, 365, 411
NaeI GCCGGC 1 cut(s) 403
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 538, 870
NcoI CCATGG 1 cut(s) 645
NdeII GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
NgoMIV GCCGGC 1 cut(s) 401
NlaIII CATG 2 cut(s) 649, 790
NlaIV GGNNCC 4 cut(s) 223, 325, 478, 577
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 406, 563
PaeR7I CTCGAG 2 cut(s) 335, 353
PcsI WCGNNNNNNNCGW 3 cut(s) 402, 432, 579
PdiI GCCGGC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 340, 437, 849
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 6 cut(s) 234, 275, 332, 347, 400, 416
Ple19I CGATCG 1 cut(s) 892
PluTI GGCGCC 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 678
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 925
PspN4I GGNNCC 4 cut(s) 223, 325, 478, 577
PspPI GGNCC 4 cut(s) 298, 462, 517, 576
PspXI VCTCGAGB 1 cut(s) 353
PsuI RGATCY 3 cut(s) 137, 620, 655
PsyI GACNNNGTC 1 cut(s) 314
PvuI CGATCG 1 cut(s) 892
RsaI GTAC 3 cut(s) 554, 685, 907
RsaNI GTAC 3 cut(s) 553, 684, 906
RseI CAYNNNNRTG 1 cut(s) 824
SalI GTCGAC 2 cut(s) 425, 770
SaqAI TTAA 2 cut(s) 375, 525
SatI GCNGC 6 cut(s) 233, 274, 331, 346, 399, 415
Sau3AI GATC 7 cut(s) 137, 246, 620, 655, 747, 889, 893
Sau96I GGNCC 4 cut(s) 298, 462, 517, 576
ScrFI CCNGG 2 cut(s) 538, 870
SfaNI GCATC 2 cut(s) 547, 690
SfcI CTRYAG 1 cut(s) 13
SfoI GGCGCC 1 cut(s) 223
Sfr274I CTCGAG 2 cut(s) 335, 353
SgrAI CRCCGGYG 1 cut(s) 401
SinI GGWCC 3 cut(s) 462, 517, 576
SlaI CTCGAG 2 cut(s) 335, 353
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 4 cut(s) 236, 335, 353, 952
SmoI CTYRAG 4 cut(s) 236, 335, 353, 952
Sse9I AATT 1 cut(s) 667
SsiI CCGC 8 cut(s) 233, 273, 331, 399, 415, 508, 560, 569
SspDI GGCGCC 1 cut(s) 221
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 536, 868
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 6 cut(s) 318, 390, 426, 471, 498, 681
TasI AATT 1 cut(s) 667
TatI WGTACW 2 cut(s) 683, 905
TauI GCSGC 5 cut(s) 235, 276, 333, 401, 417
TfiI GAWTC 3 cut(s) 340, 437, 849
Tru1I TTAA 2 cut(s) 375, 525
Tru9I TTAA 2 cut(s) 375, 525
TscAI CASTG 2 cut(s) 35, 204
TseFI GTSAC 2 cut(s) 406, 563
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 2 cut(s) 406, 563
TspDTI ATGAA 2 cut(s) 699, 727
TspRI CASTG 2 cut(s) 35, 204
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 3 cut(s) 462, 517, 576
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XhoI CTCGAG 2 cut(s) 335, 353
XmiI GTMKAC 3 cut(s) 318, 426, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.