Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6878952 .. 6879968

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCTCCTATCAGCGGTTCTGCAAAACCCCAGCTCCGGACCCCAACCTCCATTCTCATCCTTCGCGGCTATGTACCACACGATCCAAGCCATCCCTCGAGAAGTCACTGGAAACAGAGTCTCCGTCAAAGACAGAGCTCAAGGTCGAATCCCAGCCGTCGTGTTCTCTCAGCAGCTAAATCCTACCAGTGTCGCCGCTCGTCCGGTGTCCAGGAAGCACCTGCTGACCACCGAAAGGAAGCAGATTCAGGCCATTCTCAAGTCCGTGGAACTCCCATTTTTCTGCTCCACTCGGTTCCCCCTCCAGATCCGAGTCGGGTTCGGGTCATTGGATTTGCTCGAATCCGGAAATGTCATACCCATCAAGATTCATAGGGACGAAGAGAGTGGGAAGATTCTGAATTTGGTATTTGTTTTGATTGGAGAGAGCATGGAGCTGTCACCGCCGTTAAAAATCAGGGTTCGTGCGGATCTTGCTGGAGTTTCAGTACTACTGGAGCGTTGGAAGGTGCACACATTCGCACGACTGGAGAAGGAGGCAGGTTCATGTGACTCCGGGTGCAATGGTGGACTCATGAACAGTGCCTTTGAGTACACACTCAAAGCTGGTGGACTAATGAAGGAAGAGGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCAGCATCAGTTTCCAATTTCAGTGTCATCTCCTTTGATGAAGACCAAATTGCTGCAAACCTTATCAAAAATGGTCCTCTTGCTGTGGCTATTAACGCGGTTTTCATGCAAACATATGTTGGTGGAGTGTCGTGCCCCTACAATTGCTCAAGGCGGTTAGATCACGGAGTGTTACTCGTAGGTTATGGTGCAGCTGGGTATTCTCCCATCAGATTGAAGGAGAAGCCATACTGGATCATCAAGAACTCATGGGGAGAGGACGACGGACATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

320

Amino Acids

34.91

Weight (kDa)

8.95

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	182 - 317	8.3e-37	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
Acc36I	ACCTGC	3 cut(s)	228, 530, 668
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccBSI	CCGCTC	1 cut(s)	197
AccII	CGCG	2 cut(s)	65, 782
AccIII	TCCGGA	2 cut(s)	35, 344
AciI	CCGC	7 cut(s)	14, 65, 195, 443, 467, 782, 838
AclWI	GGATC	4 cut(s)	76, 301, 477, 926
AcsI	RAATTY	2 cut(s)	400, 665
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	4 cut(s)	74, 489, 593, 646
AfiI	CCNNNNNNNGG	4 cut(s)	13, 35, 234, 641
AgsI	TTSAA	1 cut(s)	901
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	6 cut(s)	33, 137, 175, 436, 605, 878
AluI	AGCT	6 cut(s)	33, 137, 175, 436, 605, 878
Alw21I	GWGCWC	2 cut(s)	139, 513
Alw26I	GTCTC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	4 cut(s)	76, 301, 477, 926
Ama87I	CYCGRG	1 cut(s)	96
Aor13HI	TCCGGA	2 cut(s)	35, 344
AoxI	GGCC	1 cut(s)	249
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	172, 686, 737, 875
ApoI	RAATTY	2 cut(s)	400, 665
AspS9I	GGNCC	2 cut(s)	38, 758
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	432
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	38, 758
BaeGI	GKGCMC	2 cut(s)	513, 821
BanII	GRGCYC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	139, 513
BbvI	GCAGC	4 cut(s)	184, 698, 724, 887
BccI	CCATC	3 cut(s)	98, 368, 899
BceAI	ACGGC	2 cut(s)	140, 430
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	124
BfuAI	ACCTGC	3 cut(s)	228, 530, 668
BisI	GCNGC	6 cut(s)	66, 173, 195, 687, 738, 876
BlsI	GCNGC	6 cut(s)	67, 174, 196, 688, 739, 877
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	211, 556
Bme18I	GGWCC	2 cut(s)	38, 758
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	38, 758
BmiI	GGNNCC	3 cut(s)	40, 296, 658
BmrFI	CCNGG	2 cut(s)	211, 556
BmsI	GCATC	1 cut(s)	698
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	843, 875
BpmI	CTGGAG	4 cut(s)	287, 498, 515, 548
BpuEI	CTTGAG	3 cut(s)	123, 242, 817
BpuMI	CCSGG	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	3 cut(s)	35, 202, 344
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 104, 134, 471, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 35, 234, 641
Bse1I	ACTGG	6 cut(s)	112, 186, 498, 531, 646, 920
Bse3DI	GCAATG	1 cut(s)	568
BseAI	TCCGGA	2 cut(s)	35, 344
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	56, 90
BseLI	CCNNNNNNNGG	4 cut(s)	13, 35, 234, 641
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	6 cut(s)	112, 186, 498, 531, 646, 920
BseSI	GKGCMC	2 cut(s)	513, 821
BseXI	GCAGC	4 cut(s)	184, 698, 724, 887
BseYI	CCCAGC	3 cut(s)	29, 151, 878
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	2 cut(s)	65, 782
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	139, 513
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	36, 203, 345, 555
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	4 cut(s)	13, 35, 234, 641
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	139, 513, 821
Bsp13I	TCCGGA	2 cut(s)	35, 344
Bsp143I	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
BspACI	CCGC	7 cut(s)	14, 65, 195, 443, 467, 782, 838
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	2 cut(s)	35, 344
BspFNI	CGCG	2 cut(s)	65, 782
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	40, 296, 658
BspMI	ACCTGC	3 cut(s)	228, 530, 668
BspPI	GGATC	4 cut(s)	76, 301, 477, 926
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	6 cut(s)	112, 186, 498, 531, 646, 920
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	2 cut(s)	375, 618
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	56, 90
BstFNI	CGCG	2 cut(s)	65, 782
BstKTI	GATC	6 cut(s)	84, 309, 472, 652, 847, 921
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 473, 779
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	209, 554
BstSLI	GKGCMC	2 cut(s)	513, 821
BstUI	CGCG	2 cut(s)	65, 782
BstV1I	GCAGC	4 cut(s)	184, 698, 724, 887
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	2 cut(s)	306, 469
BstYI	RGATCY	2 cut(s)	306, 469
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	56, 90
BtsIMutI	CAGTG	5 cut(s)	105, 193, 586, 639, 712
BveI	ACCTGC	3 cut(s)	228, 530, 668
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	2 cut(s)	38, 758
Csp6I	GTAC	4 cut(s)	73, 488, 592, 645
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	6 cut(s)	430, 546, 574, 790, 933, 953
CviQI	GTAC	4 cut(s)	73, 488, 592, 645
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	6 cut(s)	83, 308, 471, 651, 846, 920
DpnII	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
DraIII	CACNNNGTG	1 cut(s)	853
Eam1104I	CTCTTC	2 cut(s)	375, 618
EarI	CTCTTC	2 cut(s)	375, 618
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	38, 758
Eco53kI	GAGCTC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	6 cut(s)	433, 549, 577, 793, 936, 956
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	6 cut(s)	429, 545, 573, 789, 932, 952
FauNDI	CATATG	1 cut(s)	799
Fnu4HI	GCNGC	6 cut(s)	66, 173, 195, 687, 738, 876
FokI	GGATG	2 cut(s)	43, 77
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	6 cut(s)	66, 173, 195, 687, 738, 876
GluI	GCNGC	6 cut(s)	66, 173, 195, 687, 738, 876
GsaI	CCCAGC	3 cut(s)	33, 155, 882
GsuI	CTGGAG	4 cut(s)	287, 498, 515, 548
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	4 cut(s)	36, 203, 345, 555
Hin1II	CATG	6 cut(s)	433, 549, 577, 793, 936, 956
HinfI	GANTC	9 cut(s)	117, 147, 244, 312, 341, 367, 394, 551, 570
HpaII	CCGG	4 cut(s)	36, 203, 345, 555
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	4 cut(s)	511, 569, 594, 611
Hpy188I	TCNGA	3 cut(s)	311, 399, 896
Hpy188III	TCNNGA	7 cut(s)	36, 98, 304, 345, 364, 574, 925
Hpy8I	GTNNAC	4 cut(s)	511, 569, 594, 611
Hpy99I	CGWCG	2 cut(s)	161, 950
HpyAV	CCTTC	5 cut(s)	70, 499, 526, 613, 895
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	8 cut(s)	22, 511, 561, 663, 686, 740, 793, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 473, 779
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	433, 549, 577, 793, 936, 956
Kpn2I	TCCGGA	2 cut(s)	35, 344
Kzo9I	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
LmnI	GCTCC	5 cut(s)	9, 38, 290, 433, 496
Lsp1109I	GCAGC	4 cut(s)	184, 698, 724, 887
LweI	GCATC	1 cut(s)	698
MaeIII	GTNAC	4 cut(s)	103, 438, 548, 855
MalI	GATC	6 cut(s)	83, 308, 471, 651, 846, 920
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
MboII	GAAGA	4 cut(s)	392, 403, 635, 737
MfeI	CAATTG	1 cut(s)	826
MflI	RGATCY	2 cut(s)	306, 469
MhlI	GDGCHC	3 cut(s)	139, 513, 821
MluCI	AATT	6 cut(s)	400, 665, 681, 700, 732, 826
MlyI	GAGTC	4 cut(s)	126, 321, 545, 564
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	7 cut(s)	57, 105, 311, 529, 619, 771, 934
MroI	TCCGGA	2 cut(s)	35, 344
MseI	TTAA	3 cut(s)	449, 777, 958
MspA1I	CMGCKG	2 cut(s)	14, 878
MspI	CCGG	4 cut(s)	36, 203, 345, 555
MspR9I	CCNGG	2 cut(s)	211, 556
MunI	CAATTG	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	65, 782
MwoI	GCNNNNNNNGC	3 cut(s)	442, 473, 779
NciI	CCSGG	1 cut(s)	556
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
NlaIII	CATG	6 cut(s)	433, 549, 577, 793, 936, 956
NlaIV	GGNNCC	3 cut(s)	40, 296, 658
NmuCI	GTSAC	3 cut(s)	103, 438, 548
PaeR7I	CTCGAG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	228
PfeI	GAWTC	5 cut(s)	147, 244, 341, 367, 394
PflMI	CCANNNNNTGG	1 cut(s)	641
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	67, 174, 196, 688, 739, 877
PleI	GAGTC	4 cut(s)	125, 320, 545, 564
PpsI	GAGTC	4 cut(s)	125, 320, 545, 564
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	3 cut(s)	29, 151, 878
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	40, 296, 658
PspPI	GGNCC	2 cut(s)	38, 758
PsuI	RGATCY	2 cut(s)	306, 469
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	4 cut(s)	74, 489, 593, 646
RsaNI	GTAC	4 cut(s)	73, 488, 592, 645
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	449, 777, 958
SatI	GCNGC	6 cut(s)	66, 173, 195, 687, 738, 876
Sau3AI	GATC	6 cut(s)	81, 306, 469, 649, 844, 918
Sau96I	GGNCC	2 cut(s)	38, 758
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	4 cut(s)	126, 321, 545, 564
ScrFI	CCNGG	2 cut(s)	211, 556
SduI	GDGCHC	3 cut(s)	139, 513, 821
SfaNI	GCATC	1 cut(s)	698
Sfr274I	CTCGAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	38, 758
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	4 cut(s)	96, 138, 257, 832
SmoI	CTYRAG	4 cut(s)	96, 138, 257, 832
Sse9I	AATT	6 cut(s)	400, 665, 681, 700, 732, 826
SsiI	CCGC	7 cut(s)	14, 65, 195, 443, 467, 782, 838
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	209, 554
TaaI	ACNGT	1 cut(s)	581
TaqI	TCGA	3 cut(s)	97, 145, 339
TasI	AATT	6 cut(s)	400, 665, 681, 700, 732, 826
TatI	WGTACW	2 cut(s)	487, 591
TauI	GCSGC	2 cut(s)	68, 197
TfiI	GAWTC	5 cut(s)	147, 244, 341, 367, 394
Tru1I	TTAA	3 cut(s)	449, 777, 958
Tru9I	TTAA	3 cut(s)	449, 777, 958
TscAI	CASTG	5 cut(s)	112, 193, 586, 646, 712
TseFI	GTSAC	3 cut(s)	103, 438, 548
TseI	GCWGC	4 cut(s)	172, 686, 737, 875
Tsp45I	GTSAC	3 cut(s)	103, 438, 548
TspDTI	ATGAA	6 cut(s)	359, 534, 590, 632, 738, 778
TspGWI	ACGGA	3 cut(s)	112, 253, 864
TspRI	CASTG	5 cut(s)	112, 193, 586, 646, 712
Van91I	CCANNNNNTGG	1 cut(s)	641
VneI	GTGCAC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	38, 758
XapI	RAATTY	2 cut(s)	400, 665
XhoI	CTCGAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.