pycom04g07620

Pentatricopeptide repeat-containing protein At4g18975

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
8371604 .. 8371969
366 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGTTGACGAATCTTGTAAAGCTTTTCGAGGGCCTGGAAGCTTTCGATGGCAAGCCTCCAGAGAAGTCAATAGTCCGAAGAGTGGCAGATGCATATGAGATGTTAGGCAGGCTTGAAGACAAAGAGAGGGTATTGCAGAAGTACAACTATCTTTTAACAGACAATGTAGTACTCAAGAAATCCATAATGGCCTTGTCTAAGAACAAGAAGAAACTCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

9.6

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 143, 171
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 22, 41
AluI AGCT 2 cut(s) 22, 41
AoxI GGCC 2 cut(s) 31, 189
AspS9I GGNCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 82
BshFI GGCC 2 cut(s) 33, 191
BslI CCNNNNNNNGG 1 cut(s) 82
BsnI GGCC 2 cut(s) 33, 191
BspANI GGCC 2 cut(s) 33, 191
Bst2UI CCWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 53, 110
BstDEI CTNAG 1 cut(s) 198
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 33, 191
Cac8I GCNNGC 2 cut(s) 53, 110
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 142, 170
CviJI RGCY 6 cut(s) 22, 33, 41, 55, 112, 191
CviKI_1 RGCY 6 cut(s) 22, 33, 41, 55, 112, 191
CviQI GTAC 2 cut(s) 142, 170
DdeI CTNAG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 94
FaiI YATR 3 cut(s) 94, 96, 185
FauNDI CATATG 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 33, 191
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 20, 39
HinfI GANTC 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 59, 175
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 92, 136
HpyF3I CTNAG 1 cut(s) 198
LpnPI CCDG 4 cut(s) 20, 47, 72, 94
LweI GCATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 90, 128, 220
MnlI CCTC 3 cut(s) 22, 66, 120
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 94
PfeI GAWTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 2 cut(s) 143, 171
RsaNI GTAC 2 cut(s) 142, 170
SaqAI TTAA 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 35
SetI ASST 2 cut(s) 24, 43
SfaNI GCATC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 33
TaqI TCGA 2 cut(s) 27, 45
TatI WGTACW 2 cut(s) 141, 169
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.