Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10388011 .. 10389405

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGGATTCAGAAGCAGTCGGTGAACTCAAAACCGAAAACCCAGAACAAAAACCACGGGTTCGGGCTACTCGGGTGGCTTTTTAAGAGGTTAAAGAATCGGAATCGGACCCGAAAGCGGGAAATCAACGGCGGCGATGGGGTTCAGGTCTCAGTGAAGGACATTCTCCAGTGGGATTCGTCAGTGGGGCGAAGAAAGATTTCTTCCGATCAGTTGGAGGAAACGGTTAAGTCTTGTTTGGAAGTTGAGGTCAAAAGTGCTTCCCTCATAAGCATTGGGAGGCCCAGCAGCGCGGTGTGGTCCGAAACCAACGAAGCCACTTCAAGCAGCTGCAGATCTCAGATTCTCAGCCTCGATCTCTCTCCCCTATATTATTCAAACCTCTTCAATTTTTTTTATGCTGCTGAAAATTATCATCCAAAATCTGTTTGCGCTAAATTAATATTTATATTAATCGGTTTTTTTTTTTTTCCTACAAAAATCCCTTTTGAAAGCTGCAAGCTTTTTTCGATGAACATGGCGGCGCAGAAGCACTTACACGAGCTGCTGAGAGAAGTCCAGGAGCCGTTCCTGCTCAACAACTACATTGCCGATAAACGCTGCCAGCTGAAAAGTGCTTCCACGAAAAGCCAACAACACTTACAGGTCAAAAAACGCAGACCCATCTCCCAAGTTTCAAACTTTCCCGGCAATCTTTGCAAAAACATCTTTGCTGGGTTTGTCGGTGATCTCGAGCTAGCCGCCGTCTCCATCGAGAATTCTGTCATCGCGGGACTCGCTTTCGATGTCATGTTGGGTATGGGAAGTGCATTGGAAACCCTGTGTGGGCAAGCGTACGGTGCGGGTCAGATCCGGATGTTAGGGGTGTACATGCGGAGATCGATCTTGTGGATCATTCTGCTGGTGACAGCTTGCGTTTTGGTCCCCGTCTATGTGTGGTCCTCACCCATTCTCGAGCTAGTTGGAGAGACCACCGAGATTTCCGAGGCCGCCGGGAAGTTTGCAGTGAAAGTTAGCGTGATAGCCTGGATCTTAGCTGCAGTACTTGTAAAACATGCAGTCTTCAGTTGGTTGCTGATGATTAAGCTCGGCTGGGGTCTAACTGGCGCAGCGATCACACTCAACGCCTCCGATGCCTGCAAGGCCGCCTTGGAGAAGAAGATCGCAAAGCTCACTCCGGCCACCGTGGTCAAAATCGGCGAAGAACTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

405

Amino Acids

44.73

Weight (kDa)

9.49

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	233 - 353	4.5e-18	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	293, 770
AccIII	TCCGGA	1 cut(s)	852
AclWI	GGATC	3 cut(s)	844, 899, 1037
AcoI	YGGCCR	1 cut(s)	1179
AcsI	RAATTY	1 cut(s)	757
AcuI	CTGAAG	2 cut(s)	1048, 1193
AfaI	GTAC	3 cut(s)	836, 869, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	117, 118, 825
AgsI	TTSAA	5 cut(s)	324, 378, 388, 491, 678
AjnI	CCWGG	2 cut(s)	558, 1025
Alw26I	GTCTC	3 cut(s)	154, 751, 962
AlwI	GGATC	3 cut(s)	844, 899, 1037
Ama87I	CYCGRG	3 cut(s)	71, 731, 953
Aor13HI	TCCGGA	1 cut(s)	852
AoxI	GGCC	4 cut(s)	281, 987, 1143, 1179
ApeKI	GCWGC	9 cut(s)	288, 327, 330, 401, 495, 544, 600, 1037, 1109
ApoI	RAATTY	1 cut(s)	757
AseI	ATTAAT	2 cut(s)	440, 452
Asp700I	GAANNNNTTC	2 cut(s)	199, 1206
AspLEI	GCGC	4 cut(s)	293, 434, 526, 1109
AspS9I	GGNCC	5 cut(s)	108, 282, 300, 922, 939
AsuC2I	CCSGG	2 cut(s)	687, 994
AsuHPI	GGTGA	4 cut(s)	34, 737, 916, 936
AsuNHI	GCTAGC	1 cut(s)	736
AvaI	CYCGRG	3 cut(s)	71, 731, 953
AvaII	GGWCC	4 cut(s)	108, 300, 922, 939
BauI	CACGAG	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	1054
BbvI	GCAGC	9 cut(s)	300, 317, 339, 388, 482, 531, 587, 1024, 1121
BccI	CCATC	3 cut(s)	131, 671, 758
BceAI	ACGGC	3 cut(s)	145, 550, 728
BciT130I	CCWGG	2 cut(s)	560, 1027
BcnI	CCSGG	2 cut(s)	687, 994
BcoDI	GTCTC	3 cut(s)	154, 751, 962
BfaI	CTAG	2 cut(s)	737, 959
BfmI	CTRYAG	2 cut(s)	331, 1038
BglI	GCCNNNNNGGC	1 cut(s)	1142
BglII	AGATCT	1 cut(s)	335
BmcAI	AGTACT	1 cut(s)	1044
Bme1390I	CCNGG	4 cut(s)	560, 687, 994, 1027
Bme18I	GGWCC	4 cut(s)	108, 300, 922, 939
BmeT110I	CYCGRG	3 cut(s)	71, 731, 953
BmgT120I	GGNCC	5 cut(s)	108, 282, 300, 922, 939
BmiI	GGNNCC	3 cut(s)	110, 564, 924
BmrFI	CCNGG	4 cut(s)	560, 687, 994, 1027
BmsI	GCATC	1 cut(s)	1123
BmtI	GCTAGC	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	1054
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	687, 994
Bsa29I	ATCGAT	1 cut(s)	881
BsaI	GGTCTC	2 cut(s)	154, 962
BsaJI	CCNNGG	4 cut(s)	55, 984, 1149, 1185
BsaWI	WCCGGW	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 118, 825
Bse1I	ACTGG	2 cut(s)	169, 1108
Bse3DI	GCAATG	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	560, 1027
BseCI	ATCGAT	1 cut(s)	881
BseDI	CCNNGG	4 cut(s)	55, 984, 1149, 1185
BseGI	GGATG	2 cut(s)	415, 861
BseLI	CCNNNNNNNGG	3 cut(s)	117, 118, 825
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	4 cut(s)	165, 353, 361, 539
BseNI	ACTGG	2 cut(s)	169, 1108
BseXI	GCAGC	9 cut(s)	300, 317, 339, 388, 482, 531, 587, 1024, 1121
BseYI	CCCAGC	3 cut(s)	284, 713, 1092
Bsh1236I	CGCG	2 cut(s)	293, 770
BshFI	GGCC	4 cut(s)	283, 989, 1145, 1181
BshVI	ATCGAT	1 cut(s)	881
BsiHKCI	CYCGRG	3 cut(s)	71, 731, 953
BsiSI	CCGG	4 cut(s)	687, 853, 993, 1178
BsiWI	CGTACG	1 cut(s)	834
BslFI	GGGAC	2 cut(s)	786, 908
BslI	CCNNNNNNNGG	3 cut(s)	117, 118, 825
BsmAI	GTCTC	3 cut(s)	154, 751, 962
BsmBI	CGTCTC	1 cut(s)	751
BsmFI	GGGAC	2 cut(s)	786, 908
BsnI	GGCC	4 cut(s)	283, 989, 1145, 1181
Bso31I	GGTCTC	2 cut(s)	154, 962
BsoBI	CYCGRG	3 cut(s)	71, 731, 953
Bsp13I	TCCGGA	1 cut(s)	852
Bsp1407I	TGTACA	1 cut(s)	867
BspANI	GGCC	4 cut(s)	283, 989, 1145, 1181
BspCNI	CTCAG	4 cut(s)	164, 352, 360, 540
BspDI	ATCGAT	1 cut(s)	881
BspEI	TCCGGA	1 cut(s)	852
BspFNI	CGCG	2 cut(s)	293, 770
BspLI	GGNNCC	3 cut(s)	110, 564, 924
BspMAI	CTGCAG	2 cut(s)	335, 1042
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	3 cut(s)	844, 899, 1037
BspTNI	GGTCTC	2 cut(s)	154, 962
BsrDI	GCAATG	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	169, 1108
BssECI	CCNNGG	4 cut(s)	55, 984, 1149, 1185
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	1149
Bst2BI	CACGAG	1 cut(s)	539
Bst2UI	CCWGG	2 cut(s)	560, 1027
Bst4CI	ACNGT	3 cut(s)	226, 839, 1186
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	696
BstAUI	TGTACA	1 cut(s)	867
BstC8I	GCNNGC	6 cut(s)	500, 605, 738, 831, 913, 1138
BstDEI	CTNAG	5 cut(s)	151, 339, 347, 548, 1033
BstDSI	CCRYGG	2 cut(s)	55, 1185
BstF5I	GGATG	2 cut(s)	415, 861
BstFNI	CGCG	2 cut(s)	293, 770
BstHHI	GCGC	4 cut(s)	293, 434, 526, 1109
BstMAI	GTCTC	3 cut(s)	154, 751, 962
BstMWI	GCNNNNNNNGC	6 cut(s)	571, 696, 776, 839, 1133, 1142
BstNI	CCWGG	2 cut(s)	560, 1027
BstNSI	RCATGY	2 cut(s)	874, 1058
BstSCI	CCNGG	4 cut(s)	558, 685, 992, 1025
BstSFI	CTRYAG	2 cut(s)	331, 1038
BstUI	CGCG	2 cut(s)	293, 770
BstV1I	GCAGC	9 cut(s)	300, 317, 339, 388, 482, 531, 587, 1024, 1121
BstV2I	GAAGAC	1 cut(s)	1054
BstX2I	RGATCY	3 cut(s)	335, 849, 1029
BstYI	RGATCY	3 cut(s)	335, 849, 1029
Bsu15I	ATCGAT	1 cut(s)	881
BsuRI	GGCC	4 cut(s)	283, 989, 1145, 1181
BsuTUI	ATCGAT	1 cut(s)	881
BtgI	CCRYGG	2 cut(s)	55, 1185
BtgZI	GCGATG	2 cut(s)	150, 751
BtsCI	GGATG	2 cut(s)	415, 861
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	4 cut(s)	159, 176, 189, 1011
Cac8I	GCNNGC	6 cut(s)	500, 605, 738, 831, 913, 1138
CfoI	GCGC	4 cut(s)	293, 434, 526, 1109
Cfr13I	GGNCC	5 cut(s)	108, 282, 300, 922, 939
ClaI	ATCGAT	1 cut(s)	881
Csp6I	GTAC	3 cut(s)	835, 868, 1043
CviAII	CATG	4 cut(s)	517, 790, 871, 1055
CviQI	GTAC	3 cut(s)	835, 868, 1043
DdeI	CTNAG	5 cut(s)	151, 339, 347, 548, 1033
EaeI	YGGCCR	1 cut(s)	1179
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	1149
Eco31I	GGTCTC	2 cut(s)	154, 962
Eco47I	GGWCC	4 cut(s)	108, 300, 922, 939
Eco57I	CTGAAG	2 cut(s)	1048, 1193
Eco88I	CYCGRG	3 cut(s)	71, 731, 953
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	558, 1025
EcoT14I	CCWWGG	1 cut(s)	1149
ErhI	CCWWGG	1 cut(s)	1149
Esp3I	CGTCTC	1 cut(s)	751
FaeI	CATG	4 cut(s)	520, 793, 874, 1058
FalI	AAGNNNNNCTT	2 cut(s)	1133, 1165
FaqI	GGGAC	2 cut(s)	786, 908
FatI	CATG	4 cut(s)	516, 789, 870, 1054
FauI	CCCGC	3 cut(s)	111, 763, 835
FokI	GGATG	2 cut(s)	402, 868
FspBI	CTAG	2 cut(s)	737, 959
GlaI	GCGC	4 cut(s)	292, 433, 525, 1108
GsaI	CCCAGC	3 cut(s)	288, 717, 1096
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	283, 989, 1145, 1181
HapII	CCGG	4 cut(s)	687, 853, 993, 1178
HhaI	GCGC	4 cut(s)	293, 434, 526, 1109
Hin1II	CATG	4 cut(s)	520, 793, 874, 1058
Hin6I	GCGC	4 cut(s)	291, 432, 524, 1107
HinP1I	GCGC	4 cut(s)	291, 432, 524, 1107
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	6 cut(s)	7, 97, 103, 176, 343, 774
HpaII	CCGG	4 cut(s)	687, 853, 993, 1178
HphI	GGTGA	4 cut(s)	34, 737, 916, 936
Hpy166II	GTNNAC	2 cut(s)	25, 868
Hpy188I	TCNGA	9 cut(s)	12, 102, 108, 208, 304, 342, 849, 985, 1132
Hpy188III	TCNNGA	4 cut(s)	731, 754, 853, 953
Hpy8I	GTNNAC	2 cut(s)	25, 868
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	226, 839, 1186
HpyCH4V	TGCA	8 cut(s)	333, 498, 699, 809, 1004, 1040, 1058, 1140
HpyF10VI	GCNNNNNNNGC	6 cut(s)	571, 696, 776, 839, 1133, 1142
HpyF3I	CTNAG	5 cut(s)	151, 339, 347, 548, 1033
Hsp92II	CATG	4 cut(s)	520, 793, 874, 1058
HspAI	GCGC	4 cut(s)	291, 432, 524, 1107
Kpn2I	TCCGGA	1 cut(s)	852
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	9 cut(s)	300, 317, 339, 388, 482, 531, 587, 1024, 1121
LweI	GCATC	1 cut(s)	1123
MaeI	CTAG	2 cut(s)	737, 959
MaeIII	GTNAC	1 cut(s)	904
MboII	GAAGA	7 cut(s)	195, 204, 376, 1054, 1168, 1171, 1214
MflI	RGATCY	3 cut(s)	335, 849, 1029
MluCI	AATT	4 cut(s)	388, 409, 437, 757
MlyI	GAGTC	1 cut(s)	768
MmeI	TCCRAC	2 cut(s)	195, 943
MroI	TCCGGA	1 cut(s)	852
MroXI	GAANNNNTTC	2 cut(s)	199, 1206
MseI	TTAA	6 cut(s)	84, 92, 228, 440, 452, 1083
MspA1I	CMGCKG	2 cut(s)	330, 607
MspI	CCGG	4 cut(s)	687, 853, 993, 1178
MspR9I	CCNGG	4 cut(s)	560, 687, 994, 1027
MvaI	CCWGG	2 cut(s)	560, 1027
MvnI	CGCG	2 cut(s)	293, 770
MwoI	GCNNNNNNNGC	6 cut(s)	571, 696, 776, 839, 1133, 1142
NciI	CCSGG	2 cut(s)	687, 994
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	4 cut(s)	520, 793, 874, 1058
NlaIV	GGNNCC	3 cut(s)	110, 564, 924
NmeAIII	GCCGAG	1 cut(s)	1068
NmuCI	GTSAC	1 cut(s)	904
NspI	RCATGY	2 cut(s)	874, 1058
PaeR7I	CTCGAG	2 cut(s)	731, 953
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PdmI	GAANNNNTTC	2 cut(s)	199, 1206
PfeI	GAWTC	5 cut(s)	7, 97, 103, 176, 343
Pfl23II	CGTACG	1 cut(s)	834
PfoI	TCCNGGA	1 cut(s)	558
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
PshBI	ATTAAT	2 cut(s)	440, 452
Psp6I	CCWGG	2 cut(s)	558, 1025
PspFI	CCCAGC	3 cut(s)	284, 713, 1092
PspGI	CCWGG	2 cut(s)	558, 1025
PspLI	CGTACG	1 cut(s)	834
PspN4I	GGNNCC	3 cut(s)	110, 564, 924
PspPI	GGNCC	5 cut(s)	108, 282, 300, 922, 939
PstI	CTGCAG	2 cut(s)	335, 1042
PsuI	RGATCY	3 cut(s)	335, 849, 1029
PvuII	CAGCTG	2 cut(s)	330, 607
RsaI	GTAC	3 cut(s)	836, 869, 1044
RsaNI	GTAC	3 cut(s)	835, 868, 1043
SaqAI	TTAA	6 cut(s)	84, 92, 228, 440, 452, 1083
Sau96I	GGNCC	5 cut(s)	108, 282, 300, 922, 939
ScaI	AGTACT	1 cut(s)	1044
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	4 cut(s)	560, 687, 994, 1027
SfaNI	GCATC	1 cut(s)	1123
SfcI	CTRYAG	2 cut(s)	331, 1038
Sfr274I	CTCGAG	2 cut(s)	731, 953
SinI	GGWCC	4 cut(s)	108, 300, 922, 939
SlaI	CTCGAG	2 cut(s)	731, 953
SmlI	CTYRAG	2 cut(s)	731, 953
SmoI	CTYRAG	2 cut(s)	731, 953
Sse9I	AATT	4 cut(s)	388, 409, 437, 757
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	737, 959
StyD4I	CCNGG	4 cut(s)	558, 685, 992, 1025
StyI	CCWWGG	1 cut(s)	1149
TaaI	ACNGT	3 cut(s)	226, 839, 1186
TaqI	TCGA	7 cut(s)	354, 509, 732, 753, 783, 881, 954
TasI	AATT	4 cut(s)	388, 409, 437, 757
TatI	WGTACW	2 cut(s)	867, 1042
TauI	GCSGC	5 cut(s)	135, 524, 743, 992, 1148
TfiI	GAWTC	5 cut(s)	7, 97, 103, 176, 343
Tru1I	TTAA	6 cut(s)	84, 92, 228, 440, 452, 1083
Tru9I	TTAA	6 cut(s)	84, 92, 228, 440, 452, 1083
TscAI	CASTG	4 cut(s)	159, 176, 189, 1011
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	9 cut(s)	288, 327, 330, 401, 495, 544, 600, 1037, 1109
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	1 cut(s)	527
TspRI	CASTG	4 cut(s)	159, 176, 189, 1011
VpaK11BI	GGWCC	4 cut(s)	108, 300, 922, 939
VspI	ATTAAT	2 cut(s)	440, 452
XapI	RAATTY	1 cut(s)	757
XceI	RCATGY	2 cut(s)	874, 1058
XhoI	CTCGAG	2 cut(s)	731, 953
XmnI	GAANNNNTTC	2 cut(s)	199, 1206
XspI	CTAG	2 cut(s)	737, 959
ZrmI	AGTACT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.