pycom04g08890

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
10999558 .. 11000463
906 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGTCCCTGGCCATTGGACTAGCGGTTCTTTGCCTGAGCAGTTCGACCAACACCGCGACAAAAGCGGCGAAAGGGAATGGCTTAGTCGTGCGTTGTAAATATGGGTCTAAGTCAGACAGAGGAGATGACTGGTTCGAAATCTGGTTGTTTTACGTCCGGGTTGCCCCCTGCGTGATTGGGAGCGTTCCTGACCACTTCACGCTCCGCCACCTGCAATGCAAGATTAGGGTATCGCTTGAAATCAATAGGACCCGGGTTTCGGTGTCGGACTCAACCTCACTCATGCTCCGCCGCGATTGGGATGATAAGGAGTCGTCAGAGGTTATGTACGTCAGTATCGATAACGTGAGGGTCACCGGTGGGGTTGAATTCGAGGTGTACGAGAACAATGATATGGTTATGTGTAGGTTTCTGGAGTGGTGGAGGGTGTTTGGATCAATGGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

150

Amino Acids

17.02

Weight (kDa)

6.12

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 219
AccII CGCG 2 cut(s) 56, 294
AciI CCGC 6 cut(s) 23, 54, 65, 205, 289, 292
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 2 cut(s) 329, 380
AfiI CCNNNNNNNGG 2 cut(s) 259, 298
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 2 cut(s) 239, 368
AjnI CCWGG 1 cut(s) 6
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AlwI GGATC 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AsiGI ACCGGT 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 3 cut(s) 158, 253, 254
AsuHPI GGTGA 1 cut(s) 346
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BalI TGGCCA 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 3 cut(s) 158, 253, 254
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 219
BisI GCNGC 2 cut(s) 66, 292
BlsI GCNGC 2 cut(s) 67, 293
Bme1390I CCNGG 4 cut(s) 8, 158, 253, 254
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 4 cut(s) 8, 158, 253, 254
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 135
BpuMI CCSGG 3 cut(s) 158, 253, 254
Bsa29I ATCGAT 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 6, 252
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 298
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 8
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 6, 252
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 259, 298
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 56, 294
BshFI GGCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 3 cut(s) 157, 253, 357
BslI CCNNNNNNNGG 2 cut(s) 259, 298
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 434
BspACI CCGC 6 cut(s) 23, 54, 65, 205, 289, 292
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 2 cut(s) 56, 294
BspLI GGNNCC 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 442
BspT104I TTCGAA 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 6, 252
BssMI GATC 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 35, 82, 108
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 56, 294
BstKTI GATC 1 cut(s) 437
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 4 cut(s) 6, 156, 251, 252
BstUI CGCG 2 cut(s) 56, 294
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 2 cut(s) 328, 379
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 1 cut(s) 283
CviJI RGCY 2 cut(s) 11, 81
CviKI_1 RGCY 2 cut(s) 11, 81
CviQI GTAC 2 cut(s) 328, 379
DdeI CTNAG 3 cut(s) 35, 82, 108
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 9
EciI GGCGGA 2 cut(s) 194, 278
Eco47I GGWCC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 286
FaiI YATR 5 cut(s) 102, 284, 326, 395, 401
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 66, 292
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 66, 292
FspBI CTAG 1 cut(s) 20
GluI GCNGC 2 cut(s) 66, 292
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 11
HapII CCGG 3 cut(s) 157, 253, 357
Hin1II CATG 1 cut(s) 286
HinfI GANTC 2 cut(s) 269, 311
HpaII CCGG 3 cut(s) 157, 253, 357
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 115, 268, 319
Hpy188III TCNNGA 2 cut(s) 188, 413
Hpy8I GTNNAC 1 cut(s) 379
HpyCH4IV ACGT 3 cut(s) 153, 330, 345
HpyCH4V TGCA 2 cut(s) 214, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 35, 82, 108
HpySE526I ACGT 3 cut(s) 153, 330, 345
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 3 cut(s) 180, 207, 291
MaeI CTAG 1 cut(s) 20
MaeII ACGT 3 cut(s) 153, 330, 345
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 1 cut(s) 368
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 2 cut(s) 263, 320
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 113, 286, 313, 342, 367, 417
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 3 cut(s) 157, 253, 357
MspR9I CCNGG 4 cut(s) 8, 158, 253, 254
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 56, 294
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 3 cut(s) 158, 253, 254
NdeII GATC 1 cut(s) 434
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 135
PaqCI CACCTGC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 378
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 2 cut(s) 67, 293
PleI GAGTC 2 cut(s) 263, 319
PpsI GAGTC 2 cut(s) 263, 319
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 249
PspPPI RGGWCCY 1 cut(s) 249
RsaI GTAC 2 cut(s) 329, 380
RsaNI GTAC 2 cut(s) 328, 379
SatI GCNGC 2 cut(s) 66, 292
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 263, 320
ScrFI CCNGG 4 cut(s) 8, 158, 253, 254
SetI ASST 8 cut(s) 156, 213, 278, 324, 333, 348, 378, 410
SfuI TTCGAA 1 cut(s) 135
SgrAI CRCCGGYG 1 cut(s) 356
SinI GGWCC 1 cut(s) 249
SmaI CCCGGG 1 cut(s) 254
Sse9I AATT 1 cut(s) 368
SsiI CCGC 6 cut(s) 23, 54, 65, 205, 289, 292
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 4 cut(s) 6, 156, 251, 252
TaiI ACGT 3 cut(s) 156, 333, 348
TaqI TCGA 4 cut(s) 44, 135, 339, 372
TasI AATT 1 cut(s) 368
TauI GCSGC 2 cut(s) 68, 294
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspMI CCCGGG 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 368
XmaI CCCGGG 1 cut(s) 252
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.