pycom04g09280

Fringe-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
11778683 .. 11778874
192 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGAGGAACTGGCCGAAAGGAAATGTTGGTGCGGCGGTTCCCTTGGTTGCTATCGTCTGTTTATTGTTGAGTATTTCATTGGTCATGCGTAGGAGGATGAGCGGGAAGGAATTTGTGGGATGGTCGAAACTGCCCATAAGTGTTTCAGAAGTTAATCTCAAGCATGGAAACACACAGCTTTTGGTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

6.94

Weight (kDa)

11.06

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 3 cut(s) 32, 35, 102
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 110
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 110
BccI CCATC 1 cut(s) 114
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 102, 125
BseNI ACTGG 1 cut(s) 14
BshFI GGCC 1 cut(s) 13
BsnI GGCC 1 cut(s) 13
BspACI CCGC 3 cut(s) 32, 35, 102
BspANI GGCC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 102, 125
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 102, 125
CviAII CATG 2 cut(s) 85, 164
CviJI RGCY 2 cut(s) 13, 178
CviKI_1 RGCY 2 cut(s) 13, 178
EaeI YGGCCR 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 88, 167
FaiI YATR 3 cut(s) 86, 137, 165
FatI CATG 2 cut(s) 84, 163
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 109, 132
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 2 cut(s) 88, 167
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 88, 167
MbiI CCGCTC 1 cut(s) 102
MluCI AATT 1 cut(s) 110
MnlI CCTC 1 cut(s) 87
MseI TTAA 2 cut(s) 153, 186
NlaIII CATG 2 cut(s) 88, 167
NlaIV GGNNCC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 153, 186
SatI GCNGC 1 cut(s) 33
SetI ASST 1 cut(s) 180
SgeI CNNG 6 cut(s) 22, 55, 97, 115, 172, 176
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 110
SsiI CCGC 3 cut(s) 32, 35, 102
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 110
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 153, 186
Tru9I TTAA 2 cut(s) 153, 186
TspDTI ATGAA 1 cut(s) 66
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.