Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12145310 .. 12148777

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTGATGGTTTGGAGTTGCTTATCCGCCATGGATATGGTGGCTTGGAGAGGGCTGATATATACTGGGTTCTTACTGCATTTCGTGTTCGTCTGCCAGCTCCTCCTTCTGCAACCTCTGGTTTCAGCTCTGGATGGAAAACCTGGTAATACGGCTGAGTTGTTTGAGAGGGTTTCACAGAGTATAAAGGTGAAGCATTATAGCGAGGCACTTAATGATCTTAATGCTGCTATAGAGGCAGACCCTGCACTTTCAGAAGCATATTATCATCGGGCATCCGTTCTTCGTCAGATATGCAGATATGAAGAATCAGAGAAGAGCTACAAAAAGTTTTTGGAGCTAAAACCACGAGAGTCAGTTGCAGAAAAGGAGCTTTCTCAATTGATTCAGGCTCAGAACGCTCTAGATACGGCTATGACTCTCTTTGAATCAGGCGACTATGCAAAATCTTTGGAATATGTTGAAAAAGTTGTACTGGTTTTCTCTCCAGCATGCTCAAAGGCCAAATTGCTGAAGGTGAGATTGTTGTTAGCAACTAAAGACTATTCTAGTGTCATTTCTGAGGCTGGTTACATTCTCAAAGACGACGAGGATAATCTAGAGGCATTATTACTCCGGGGCCGTGCCTACTACTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAGAAAGCGTATTTTGGACTGAAGAACTTACTCAAGAAGACTAGAAGTGCCGAAGATAATGTAAATAAGGGCAAGCTGCGTGTTGCAGTAGAGGACTTTAAGGCAGCCCTAGCGTTGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAAGTTTTGGTCAAGCTTGGGAGGGGAAAGGATGCTTTAAGCAGTTGCAATGAAGCACTTACAATTGATGAGGAGCTTCTAGAAGCTTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGATGGAGCTGTGGAAGATCGATCAAATCAGCAGCTCAACAATCGCCTCAGGTTAGAATATTCGGGAAGCATTGATGAGAGCCGAGAAAGCCTTAAAGATGAGCAAGCGCAAAGACTGGTACAAGATTTTGGGAGTTTCAAAAACCGCGTCCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

387

Amino Acids

43.7

Weight (kDa)

6.05

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1149
AciI	CCGC	3 cut(s)	27, 682, 1147
AclWI	GGATC	1 cut(s)	683
AcuI	CTGAAG	3 cut(s)	533, 728, 749
AfaI	GTAC	3 cut(s)	474, 852, 1122
AfiI	CCNNNNNNNGG	1 cut(s)	823
AgsI	TTSAA	3 cut(s)	428, 464, 1141
AjnI	CCWGG	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	683
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	501, 619
ApeKI	GCWGC	4 cut(s)	227, 784, 812, 1033
ArsI	GACNNNNNNTTYG	1 cut(s)	1134
AspLEI	GCGC	1 cut(s)	1111
AspS9I	GGNCC	2 cut(s)	619, 826
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	4 cut(s)	16, 202, 529, 986
AvaII	GGWCC	1 cut(s)	826
AxyI	CCTNAGG	1 cut(s)	1049
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	752
BbvI	GCAGC	4 cut(s)	214, 771, 824, 1045
BccI	CCATC	2 cut(s)	128, 998
BceAI	ACGGC	3 cut(s)	168, 426, 606
BciT130I	CCWGG	1 cut(s)	144
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	7 cut(s)	404, 549, 599, 686, 750, 818, 953
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	4 cut(s)	228, 785, 813, 1034
BlsI	GCNGC	4 cut(s)	229, 786, 814, 1035
Bme1390I	CCNGG	2 cut(s)	144, 617
Bme18I	GGWCC	1 cut(s)	826
BmgT120I	GGNCC	2 cut(s)	619, 826
BmiI	GGNNCC	2 cut(s)	620, 828
BmrFI	CCNGG	2 cut(s)	144, 617
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	284, 895
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	617
Bsa29I	ATCGAT	1 cut(s)	1021
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	30, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	3 cut(s)	70, 480, 1122
Bse21I	CCTNAGG	1 cut(s)	1049
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	1021
BseDI	CCNNGG	2 cut(s)	30, 616
BseGI	GGATG	4 cut(s)	139, 275, 910, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	4 cut(s)	147, 407, 552, 1063
BseNI	ACTGG	3 cut(s)	70, 480, 1122
BseRI	GAGGAG	2 cut(s)	92, 959
BseXI	GCAGC	4 cut(s)	214, 771, 824, 1045
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	1149
BshFI	GGCC	2 cut(s)	503, 621
BshVI	ATCGAT	1 cut(s)	1021
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	503, 621
Bso31I	GGTCTC	1 cut(s)	683
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	217, 643, 688, 1018, 1022
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	3 cut(s)	27, 682, 1147
BspANI	GGCC	2 cut(s)	503, 621
BspCNI	CTCAG	4 cut(s)	148, 406, 553, 1062
BspDI	ATCGAT	1 cut(s)	1021
BspFNI	CGCG	1 cut(s)	1149
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	620, 828
BspPI	GGATC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	928
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	70, 480, 1122
BssECI	CCNNGG	2 cut(s)	30, 616
BssMI	GATC	5 cut(s)	217, 643, 688, 1018, 1022
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	4 cut(s)	98, 493, 782, 1107
BstDEI	CTNAG	4 cut(s)	156, 393, 561, 1049
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	139, 275, 910, 1009
BstFNI	CGCG	1 cut(s)	1149
BstHHI	GCGC	1 cut(s)	1111
BstKTI	GATC	5 cut(s)	220, 646, 691, 1021, 1025
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	5 cut(s)	217, 643, 688, 1018, 1022
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 245, 398, 818, 1089
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	142, 615
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	1149
BstV1I	GCAGC	4 cut(s)	214, 771, 824, 1045
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	1021
Bsu36I	CCTNAGG	1 cut(s)	1049
BsuRI	GGCC	2 cut(s)	503, 621
BsuTUI	ATCGAT	1 cut(s)	1021
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	139, 275, 910, 1009
Cac8I	GCNNGC	4 cut(s)	98, 493, 782, 1107
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	1111
Cfr13I	GGNCC	2 cut(s)	619, 826
ClaI	ATCGAT	1 cut(s)	1021
CseI	GACGC	1 cut(s)	1138
CsiI	ACCWGGT	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	473, 851, 1121
CviAII	CATG	3 cut(s)	31, 492, 647
CviQI	GTAC	3 cut(s)	473, 851, 1121
DdeI	CTNAG	4 cut(s)	156, 393, 561, 1049
DpnI	GATC	5 cut(s)	219, 645, 690, 1020, 1024
DpnII	GATC	5 cut(s)	217, 643, 688, 1018, 1022
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	2 cut(s)	16, 671
Eco130I	CCWWGG	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	533, 728, 749
Eco81I	CCTNAGG	1 cut(s)	1049
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 495, 650
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FatI	CATG	3 cut(s)	30, 491, 646
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	228, 785, 813, 1034
FokI	GGATG	4 cut(s)	146, 262, 917, 1016
Fsp4HI	GCNGC	4 cut(s)	228, 785, 813, 1034
FspBI	CTAG	7 cut(s)	404, 549, 599, 686, 750, 818, 953
GlaI	GCGC	1 cut(s)	1110
GluI	GCNGC	4 cut(s)	228, 785, 813, 1034
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	503, 621
HapII	CCGG	1 cut(s)	616
HgaI	GACGC	1 cut(s)	1138
HhaI	GCGC	1 cut(s)	1111
Hin1II	CATG	3 cut(s)	34, 495, 650
Hin6I	GCGC	1 cut(s)	1109
HinP1I	GCGC	1 cut(s)	1109
HindIII	AAGCTT	2 cut(s)	887, 957
HinfI	GANTC	5 cut(s)	308, 353, 385, 418, 428
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	4 cut(s)	16, 202, 529, 986
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	8 cut(s)	256, 291, 313, 396, 562, 969, 990, 1160
Hpy188III	TCNNGA	8 cut(s)	131, 404, 599, 647, 692, 742, 953, 1065
Hpy8I	GTNNAC	1 cut(s)	704
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	116, 508
HpyCH4V	TGCA	9 cut(s)	79, 112, 248, 297, 362, 443, 794, 842, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 245, 398, 818, 1089
HpyF3I	CTNAG	4 cut(s)	156, 393, 561, 1049
Hsp92II	CATG	3 cut(s)	34, 495, 650
HspAI	GCGC	1 cut(s)	1109
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	217, 643, 688, 1018, 1022
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	5 cut(s)	105, 337, 370, 946, 1007
Lsp1109I	GCAGC	4 cut(s)	214, 771, 824, 1045
LweI	GCATC	2 cut(s)	284, 895
MabI	ACCWGGT	1 cut(s)	142
MaeI	CTAG	7 cut(s)	404, 549, 599, 686, 750, 818, 953
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	5 cut(s)	219, 645, 690, 1020, 1024
MboI	GATC	5 cut(s)	217, 643, 688, 1018, 1022
MboII	GAAGA	9 cut(s)	275, 317, 328, 721, 742, 757, 773, 848, 1028
MfeI	CAATTG	2 cut(s)	380, 936
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	3 cut(s)	380, 506, 936
MlyI	GAGTC	2 cut(s)	362, 412
MmeI	TCCRAC	1 cut(s)	804
MseI	TTAA	5 cut(s)	213, 222, 807, 911, 1095
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	144, 617
MunI	CAATTG	2 cut(s)	380, 936
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	5 cut(s)	236, 245, 398, 818, 1089
NciI	CCSGG	1 cut(s)	617
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	5 cut(s)	217, 643, 688, 1018, 1022
NlaIII	CATG	3 cut(s)	34, 495, 650
NlaIV	GGNNCC	2 cut(s)	620, 828
NmeAIII	GCCGAG	1 cut(s)	1109
NspI	RCATGY	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	495
PagI	TCATGA	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	308, 385, 428
PkrI	GCNGC	4 cut(s)	229, 786, 814, 1035
PleI	GAGTC	2 cut(s)	361, 412
PpsI	GAGTC	2 cut(s)	361, 412
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	620, 828
PspPI	GGNCC	2 cut(s)	619, 826
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	3 cut(s)	474, 852, 1122
RsaNI	GTAC	3 cut(s)	473, 851, 1121
RseI	CAYNNNNRTG	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	5 cut(s)	213, 222, 807, 911, 1095
SatI	GCNGC	4 cut(s)	228, 785, 813, 1034
Sau3AI	GATC	5 cut(s)	217, 643, 688, 1018, 1022
Sau96I	GGNCC	2 cut(s)	619, 826
SchI	GAGTC	2 cut(s)	362, 412
ScrFI	CCNGG	2 cut(s)	144, 617
SexAI	ACCWGGT	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	284, 895
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	3 cut(s)	380, 506, 936
SsiI	CCGC	3 cut(s)	27, 682, 1147
SspI	AATATT	1 cut(s)	1061
SspMI	CTAG	7 cut(s)	404, 549, 599, 686, 750, 818, 953
StyD4I	CCNGG	2 cut(s)	142, 615
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	1 cut(s)	1021
TasI	AATT	3 cut(s)	380, 506, 936
TatI	WGTACW	2 cut(s)	472, 850
TfiI	GAWTC	3 cut(s)	308, 385, 428
Tru1I	TTAA	5 cut(s)	213, 222, 807, 911, 1095
Tru9I	TTAA	5 cut(s)	213, 222, 807, 911, 1095
TseI	GCWGC	4 cut(s)	227, 784, 812, 1033
TspDTI	ATGAA	3 cut(s)	318, 848, 939
TspGWI	ACGGA	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	826
XbaI	TCTAGA	3 cut(s)	403, 598, 952
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	7 cut(s)	404, 549, 599, 686, 750, 818, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.