Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12687708 .. 12689170

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTACGGAGCACAACGGAGAAGCTTAAGCTCGAACTACGGCTCCTCCTACGCACCTGACCTCCACACCATCTGGCCTTTCTACTTTGCTCAAATCGAGCTCGGCGACGACAAGCCATGGCTCAGTCTCACACACTCCCTCATCGGCTTCTTCTCCACGACGCCGGGGCAAGCTCTCCTTTCCCAGGTGAAGGATGATGGCGGTGTAGCGGTGTTGCCGATTGATTTCGAGCAATTTCGAAAAATTTGTGATGTTGAGGAGTTTTATGAAGCTTTAGAGGAGAAACCCAAGCTAACCCTCTTATGCATGAGTGCTGCAGTTCACAAAGTCCTGCTGACTCAATGGGACAATTGCAGGGTAGAGGACGGTACCAAAATTAATATTCGATTGCATAACTACCCCGAATCCATGATTGCTTTGAAGAACTTAAAAGCTGCATATATTGACAAGATTGTATCTGTGCGTGGTACAGTAGTAAAAGTTAGCACTGTCAAACCTTTTGTGGTGCAAATGGATTTTGATTGTGTGAAGTGTAAAACAAGTATTACACGCATGTGTCCTGATGGGAAATTTTCACCGCCAATAACATGCGATCTAAATGGGTGCAAGAGCAGAAATTTTGATCCCATTCGATCTACTGCTGTGACGATAGATTTTCAGAAGATAAGGATACAGGAGCTACTAAAGCCTGAAGATCATGAAGAAGGCAGGATGCCTCGAACAGTAGAATGTGAACTTTTTGAAGATCTTGTTGATGCATGCATCCCAGGAGATGTGGTGACTCTCACTGGGATTATAAGAGTCATTAACAATTACATGGACATTGGAGGAGTCAAGCAAATCGAAGGGCAAGACTCAAGGAATTTACTATTTGTATCTAGAAGCTATTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034641 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097362 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM MCM_OB

Protein Analysis

299

Amino Acids

33.7

Weight (kDa)

5.74

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	140 - 269	1.1e-28	MCM OB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	3 cut(s)	201, 209, 578
AclWI	GGATC	1 cut(s)	617
AcsI	RAATTY	4 cut(s)	243, 569, 616, 862
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	3 cut(s)	5, 370, 469
AfiI	CCNNNNNNNGG	2 cut(s)	184, 190
AflII	CTTAAG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	421, 743
AjnI	CCWGG	2 cut(s)	183, 766
AleI	CACNNNNGTG	1 cut(s)	553
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	9 cut(s)	24, 30, 100, 173, 272, 292, 434, 679, 885
AluI	AGCT	9 cut(s)	24, 30, 100, 173, 272, 292, 434, 679, 885
Alw21I	GWGCWC	2 cut(s)	13, 102
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	314, 434
ApoI	RAATTY	4 cut(s)	243, 569, 616, 862
AseI	ATTAAT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	199, 567, 790
AsuII	TTCGAA	1 cut(s)	238
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	13, 102
BbvI	GCAGC	2 cut(s)	301, 421
BccI	CCATC	3 cut(s)	77, 191, 557
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	185, 768
BciVI	GTATCC	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	663
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	2 cut(s)	315, 435
BlsI	GCNGC	2 cut(s)	316, 436
Bme1390I	CCNGG	3 cut(s)	165, 185, 768
BmiI	GGNNCC	2 cut(s)	43, 370
BmrFI	CCNGG	3 cut(s)	165, 185, 768
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	3 cut(s)	702, 745, 771
BmuI	ACTGGG	1 cut(s)	798
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	116, 164, 183, 766
BsaXI	ACNNNNNCTCC	8 cut(s)	26, 29, 45, 56, 59, 75, 762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 190
Bse1I	ACTGG	1 cut(s)	793
BseBI	CCWGG	2 cut(s)	185, 768
BseDI	CCNNGG	4 cut(s)	116, 164, 183, 766
BseGI	GGATG	3 cut(s)	199, 717, 762
BseLI	CCNNNNNNNGG	2 cut(s)	184, 190
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	4 cut(s)	34, 272, 293, 843
BseXI	GCAGC	2 cut(s)	301, 421
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	13, 102
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	184, 190
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	13, 102
Bsp143I	GATC	5 cut(s)	592, 622, 632, 694, 745
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	3 cut(s)	201, 209, 578
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	43, 370
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	4 cut(s)	116, 164, 183, 766
BssMI	GATC	5 cut(s)	592, 622, 632, 694, 745
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	2 cut(s)	185, 768
Bst4CI	ACNGT	4 cut(s)	368, 472, 490, 724
BstACI	GRCGYC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	171, 760
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	116
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	3 cut(s)	199, 717, 762
BstKTI	GATC	5 cut(s)	595, 625, 635, 697, 748
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	592, 622, 632, 694, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	685
BstNI	CCWGG	2 cut(s)	185, 768
BstNSI	RCATGY	3 cut(s)	556, 591, 762
BstSCI	CCNGG	3 cut(s)	163, 183, 766
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	301, 421
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	199, 717, 762
BtsIMutI	CAGTG	2 cut(s)	486, 786
Cac8I	GCNNGC	2 cut(s)	171, 760
CciI	TCATGA	1 cut(s)	697
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	4, 369, 468
CviAII	CATG	8 cut(s)	117, 307, 409, 553, 588, 698, 759, 817
CviQI	GTAC	3 cut(s)	4, 369, 468
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	5 cut(s)	594, 624, 634, 696, 747
DpnII	GATC	5 cut(s)	592, 622, 632, 694, 745
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	183, 766
EcoT14I	CCWWGG	1 cut(s)	116
EcoT22I	ATGCAT	3 cut(s)	308, 760, 764
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	8 cut(s)	120, 310, 412, 556, 591, 701, 762, 820
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	8 cut(s)	116, 306, 408, 552, 587, 697, 758, 816
Fnu4HI	GCNGC	2 cut(s)	315, 435
FokI	GGATG	3 cut(s)	206, 724, 749
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	315, 435
FspBI	CTAG	1 cut(s)	879
GluI	GCNGC	2 cut(s)	315, 435
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	8 cut(s)	120, 310, 412, 556, 591, 701, 762, 820
HindIII	AAGCTT	2 cut(s)	22, 270
HinfI	GANTC	6 cut(s)	337, 404, 781, 801, 831, 854
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	199, 567, 790
Hpy166II	GTNNAC	2 cut(s)	322, 734
Hpy188I	TCNGA	1 cut(s)	660
Hpy188III	TCNNGA	3 cut(s)	560, 698, 879
Hpy8I	GTNNAC	2 cut(s)	322, 734
Hpy99I	CGWCG	2 cut(s)	110, 163
HpyAV	CCTTC	3 cut(s)	184, 698, 839
HpyCH4III	ACNGT	4 cut(s)	368, 472, 490, 724
HpyCH4V	TGCA	9 cut(s)	306, 317, 354, 391, 437, 508, 606, 758, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	685
HpyF3I	CTNAG	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	8 cut(s)	120, 310, 412, 556, 591, 701, 762, 820
KpnI	GGTACC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	592, 622, 632, 694, 745
LmnI	GCTCC	3 cut(s)	8, 47, 676
Lsp1109I	GCAGC	2 cut(s)	301, 421
LweI	GCATC	3 cut(s)	702, 745, 771
MaeI	CTAG	1 cut(s)	879
MaeIII	GTNAC	2 cut(s)	643, 778
MalI	GATC	5 cut(s)	594, 624, 634, 696, 747
MboI	GATC	5 cut(s)	592, 622, 632, 694, 745
MboII	GAAGA	6 cut(s)	142, 433, 673, 704, 713, 755
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	13, 102
MluCI	AATT	8 cut(s)	233, 243, 349, 375, 569, 616, 811, 862
MlyI	GAGTC	5 cut(s)	331, 775, 810, 840, 848
MnlI	CCTC	9 cut(s)	55, 71, 149, 250, 271, 308, 355, 726, 821
Mph1103I	ATGCAT	3 cut(s)	308, 760, 764
MseI	TTAA	5 cut(s)	26, 378, 428, 807, 895
MslI	CAYNNNNRTG	1 cut(s)	553
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	165, 185, 768
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	2 cut(s)	185, 768
MwoI	GCNNNNNNNGC	1 cut(s)	685
NciI	CCSGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	5 cut(s)	592, 622, 632, 694, 745
NlaIII	CATG	8 cut(s)	120, 310, 412, 556, 591, 701, 762, 820
NlaIV	GGNNCC	2 cut(s)	43, 370
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	643, 778
NsiI	ATGCAT	3 cut(s)	308, 760, 764
NspI	RCATGY	3 cut(s)	556, 591, 762
NspV	TTCGAA	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	553
PaeI	GCATGC	1 cut(s)	762
PagI	TCATGA	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	316, 436
PleI	GAGTC	5 cut(s)	331, 775, 809, 839, 848
PpsI	GAGTC	5 cut(s)	331, 775, 809, 839, 848
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	183, 766
PspGI	CCWGG	2 cut(s)	183, 766
PspN4I	GGNNCC	2 cut(s)	43, 370
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	3 cut(s)	5, 370, 469
RsaNI	GTAC	3 cut(s)	4, 369, 468
RseI	CAYNNNNRTG	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	26, 378, 428, 807, 895
SatI	GCNGC	2 cut(s)	315, 435
Sau3AI	GATC	5 cut(s)	592, 622, 632, 694, 745
SchI	GAGTC	5 cut(s)	331, 775, 810, 840, 848
ScrFI	CCNGG	3 cut(s)	165, 185, 768
SduI	GDGCHC	2 cut(s)	13, 102
SfaNI	GCATC	3 cut(s)	702, 745, 771
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	25, 856
SmoI	CTYRAG	2 cut(s)	25, 856
SphI	GCATGC	1 cut(s)	762
Sse9I	AATT	8 cut(s)	233, 243, 349, 375, 569, 616, 811, 862
SsiI	CCGC	3 cut(s)	201, 209, 578
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	163, 183, 766
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	4 cut(s)	368, 472, 490, 724
TaqI	TCGA	8 cut(s)	32, 96, 228, 238, 385, 631, 718, 843
TasI	AATT	8 cut(s)	233, 243, 349, 375, 569, 616, 811, 862
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	5 cut(s)	26, 378, 428, 807, 895
Tru9I	TTAA	5 cut(s)	26, 378, 428, 807, 895
TscAI	CASTG	2 cut(s)	493, 793
TseFI	GTSAC	2 cut(s)	643, 778
TseI	GCWGC	2 cut(s)	314, 434
Tsp45I	GTSAC	2 cut(s)	643, 778
TspDTI	ATGAA	2 cut(s)	282, 714
TspGWI	ACGGA	2 cut(s)	21, 31
TspRI	CASTG	2 cut(s)	493, 793
Vha464I	CTTAAG	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	4 cut(s)	243, 569, 616, 862
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	3 cut(s)	556, 591, 762
XspI	CTAG	1 cut(s)	879
Zsp2I	ATGCAT	3 cut(s)	308, 760, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.