pycom04g10520

ubiquitin-protein transferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
13237760 .. 13239165
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGGATACACGAGATGGAGATGGCATAGAAGTATCCTTGAATCTCAAGGAAGAAGACCTGGCCATATTTGAAAGCAATAGGGAGCTGCTTGAGGTGATAATGTGCCTCCACCATTCAATTCATTTGAATCTACTGGCCTCCCATCTGAGATTCAGAGGTTTTGAGCATCCACAAATTCCAAGGCGTTCAAACTTTATACTCTCGAATGAAATGGTTGAAGATTACTACTTTCACCAAGTTTATCTCCAACTCCAGGTATTTTCTCCCATTGACAACTTAAAATCAACTGCACTGCACCTCTATACTTGCATAACTCAGTTTCTCTCCTCCTTAAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.22

Weight (kDa)

5.34

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 174, 334
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 6 cut(s) 40, 71, 117, 127, 189, 218
AjnI CCWGG 2 cut(s) 57, 252
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AoxI GGCC 2 cut(s) 60, 135
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 174, 334
AsuHPI GGTGA 2 cut(s) 106, 224
BalI TGGCCA 1 cut(s) 62
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 72
BccI CCATC 3 cut(s) 8, 14, 150
BciT130I CCWGG 2 cut(s) 59, 254
BciVI GTATCC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 59, 254
BmrFI CCNGG 2 cut(s) 59, 254
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 29, 110
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 2 cut(s) 59, 254
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 137, 329
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 2 cut(s) 273, 278
BshFI GGCC 2 cut(s) 62, 137
BslI CCNNNNNNNGG 1 cut(s) 253
BsnI GGCC 2 cut(s) 62, 137
BspANI GGCC 2 cut(s) 62, 137
BspCNI CTCAG 2 cut(s) 138, 328
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 179
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 59, 254
BstDEI CTNAG 2 cut(s) 146, 315
BstF5I GGATG 1 cut(s) 166
BstNI CCWGG 2 cut(s) 59, 254
BstSCI CCNGG 2 cut(s) 57, 252
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 60
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 62, 137
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
CviJI RGCY 3 cut(s) 62, 85, 137
CviKI_1 RGCY 3 cut(s) 62, 85, 137
DdeI CTNAG 2 cut(s) 146, 315
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 57, 252
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaiI YATR 6 cut(s) 26, 65, 197, 303, 311, 340
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 62, 137
HinfI GANTC 3 cut(s) 40, 127, 150
HphI GGTGA 2 cut(s) 106, 224
Hpy188I TCNGA 2 cut(s) 147, 155
Hpy188III TCNNGA 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 290, 295, 309
HpyF3I CTNAG 2 cut(s) 146, 315
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 44, 71, 119, 239, 266
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 62, 65, 230
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 117, 174, 334
MluNI TGGCCA 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 6 cut(s) 85, 116, 148, 149, 308, 337
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 278, 332
Msp20I TGGCCA 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 59, 254
MvaI CCWGG 2 cut(s) 59, 254
PfeI GAWTC 3 cut(s) 40, 127, 150
PkrI GCNGC 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 57, 252
PspGI CCWGG 2 cut(s) 57, 252
SaqAI TTAA 2 cut(s) 278, 332
SatI GCNGC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 59, 254
SetI ASST 6 cut(s) 60, 87, 96, 160, 258, 300
SfaNI GCATC 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 44, 89
SmoI CTYRAG 2 cut(s) 44, 89
Sse9I AATT 3 cut(s) 117, 174, 334
StyD4I CCNGG 2 cut(s) 57, 252
StyI CCWWGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 117, 174, 334
TfiI GAWTC 3 cut(s) 40, 127, 150
Tru1I TTAA 2 cut(s) 278, 332
Tru9I TTAA 2 cut(s) 278, 332
TscAI CASTG 1 cut(s) 297
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 110, 222, 327
TspRI CASTG 1 cut(s) 297
XapI RAATTY 2 cut(s) 174, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.