Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13665943 .. 13667712

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAATCACCCCTGATCAGACAAGGAAAGTTGGGATGGGGCTGTCACCATCCCCATCTCCTTTTCTTACTCCTCGTCCCGAAAGGCGGCGCAAAACGCTTGAGTACAATCCAAATCGTCAAGACAAGGATAAAGAGGTTAATGTGCAAGTTCTTCTCAGATGCAGGCCTTTAAGTGATGAAGAGCAGAAGTTGAATATCCAGAAGGTGGTATCCTGTAATGAACAGAAAAGAGAGGTCACTGTTATGCAAAGTCTAAATAACAAGCAAGTAGATAAACTGTTCACTTTTGACAGGGTTTTTGGGCCAAAAGCACAGCAAAAATCAATATATGAGCAAGCCATTTCCCCGATAGTTAATGAAGCTCTCGAGGGATTCAACTGCACTGTTTTCGCTTATGGGCAGACGGGAACTGGTAAAACTTACACAATGGAGGGCGGGATGAGAAATAAGAGTGGCAATTTGCCTACTGAAGCTGGTGTTATTCCACGGGCTGTTCGTCAAATTTTTGATACACTTGAAGCACAAGATGCTGACTATAGTGTGAAAGTGACGTTCTTGGAAATATATAATGAAGAAATAACTGATTTACTAGCACCCGACGAGAATCCAAGAACTGCGGACGACAGGCAAAAGAAATCTATTTCGTTGATGGAGGATGGAAAGGGTTGTGTGATAGTAAGAGGCCTTGAAGAAGAATATGTATATAGTGTAAATGAAATTTATACTCTATTGGAACGAGGGTCTGCCAAGAGGCGTACAGCAGACACTCTGTTGAACAAGCGCAGCAGTCGCTCTCATTCTGTATTTTCCATTACTGTCCTCATAAAAGAAGCAACAGTTGGAGATGAGGAGCTAATTAAATGTGGCAAAATTAATCTTGTGGATCTGACAGAACGATCGATCGGAAAACATATCTCGTTCAGGTGCACGAGAGGGACGTGCAAGAGAAGCAGGGGAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

323

Amino Acids

36.39

Weight (kDa)

8.94

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	44 - 198	7.5e-29	Microtubule binding
Kinesin	PF00225	54 - 298	3.7e-72	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	3 cut(s)	88, 438, 620
AclWI	GGATC	1 cut(s)	894
AcsI	RAATTY	2 cut(s)	504, 720
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	107, 760
AfiI	CCNNNNNNNGG	2 cut(s)	87, 208
AgsI	TTSAA	5 cut(s)	196, 379, 521, 692, 778
AjiI	CACGTC	1 cut(s)	942
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AluBI	AGCT	3 cut(s)	365, 476, 856
AluI	AGCT	3 cut(s)	365, 476, 856
Alw21I	GWGCWC	1 cut(s)	932
Alw44I	GTGCAC	1 cut(s)	928
AlwI	GGATC	1 cut(s)	894
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	167, 305, 685
ApaLI	GTGCAC	1 cut(s)	928
ApeKI	GCWGC	1 cut(s)	786
ApoI	RAATTY	2 cut(s)	504, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AseI	ATTAAT	1 cut(s)	876
AspLEI	GCGC	2 cut(s)	93, 786
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	932
BauI	CACGAG	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	932
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	5 cut(s)	31, 58, 64, 646, 653
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	89, 787
BlsI	GCNGC	2 cut(s)	90, 788
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	305
BmsI	GCATC	2 cut(s)	152, 520
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	902
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 208
Bse1I	ACTGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	4 cut(s)	42, 50, 447, 664
BseLI	CCNNNNNNNGG	2 cut(s)	87, 208
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	63, 866
BseSI	GKGCMC	1 cut(s)	932
BseXI	GCAGC	1 cut(s)	798
BsgI	GTGCAG	1 cut(s)	367
Bsh1285I	CGRYCG	2 cut(s)	902, 906
BshFI	GGCC	3 cut(s)	169, 307, 687
BshVI	ATCGAT	1 cut(s)	902
BsiEI	CGRYCG	2 cut(s)	902, 906
BsiHKAI	GWGCWC	1 cut(s)	932
BsiHKCI	CYCGRG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	63, 952
BslI	CCNNNNNNNGG	2 cut(s)	87, 208
BsmFI	GGGAC	2 cut(s)	63, 952
BsnI	GGCC	3 cut(s)	169, 307, 687
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp143I	GATC	4 cut(s)	16, 886, 899, 903
BspACI	CCGC	3 cut(s)	88, 438, 620
BspANI	GGCC	3 cut(s)	169, 307, 687
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	902
BspPI	GGATC	1 cut(s)	894
BspQI	GCTCTTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	4 cut(s)	16, 886, 899, 903
BssSI	CACGAG	1 cut(s)	931
Bst2BI	CACGAG	1 cut(s)	931
Bst4CI	ACNGT	5 cut(s)	244, 282, 388, 820, 841
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	167, 339
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	4 cut(s)	42, 50, 447, 664
BstHHI	GCGC	2 cut(s)	93, 786
BstKTI	GATC	4 cut(s)	19, 889, 902, 906
BstMBI	GATC	4 cut(s)	16, 886, 899, 903
BstMCI	CGRYCG	2 cut(s)	902, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 530, 792, 951
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	932
BstV1I	GCAGC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
Bsu15I	ATCGAT	1 cut(s)	902
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	169, 307, 687
BsuTUI	ATCGAT	1 cut(s)	902
BtgI	CCRYGG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	942
BtsCI	GGATG	4 cut(s)	42, 50, 447, 664
BtsIMutI	CAGTG	2 cut(s)	240, 384
Cac8I	GCNNGC	2 cut(s)	167, 339
CfoI	GCGC	2 cut(s)	93, 786
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	902
Csp6I	GTAC	2 cut(s)	106, 759
CviJI	RGCY	9 cut(s)	43, 169, 307, 341, 365, 476, 494, 687, 856
CviKI_1	RGCY	9 cut(s)	43, 169, 307, 341, 365, 476, 494, 687, 856
CviQI	GTAC	2 cut(s)	106, 759
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	4 cut(s)	18, 888, 901, 905
DpnII	GATC	4 cut(s)	16, 886, 899, 903
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco147I	AGGCCT	2 cut(s)	169, 687
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	368
FaqI	GGGAC	2 cut(s)	63, 952
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	89, 787
FokI	GGATG	4 cut(s)	37, 49, 454, 671
Fsp4HI	GCNGC	2 cut(s)	89, 787
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	2 cut(s)	92, 785
GluI	GCNGC	2 cut(s)	89, 787
HaeIII	GGCC	3 cut(s)	169, 307, 687
HhaI	GCGC	2 cut(s)	93, 786
Hin6I	GCGC	2 cut(s)	91, 784
HinP1I	GCGC	2 cut(s)	91, 784
HinfI	GANTC	2 cut(s)	375, 607
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	285, 930
Hpy188I	TCNGA	4 cut(s)	21, 161, 891, 908
Hpy188III	TCNNGA	4 cut(s)	80, 122, 202, 368
Hpy8I	GTNNAC	2 cut(s)	285, 930
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	5 cut(s)	244, 282, 388, 820, 841
HpyCH4IV	ACGT	2 cut(s)	554, 941
HpyCH4V	TGCA	6 cut(s)	148, 165, 250, 384, 930, 945
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 530, 792, 951
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	554, 941
HspAI	GCGC	2 cut(s)	91, 784
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 886, 899, 903
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	2 cut(s)	152, 520
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	554, 941
MaeIII	GTNAC	3 cut(s)	45, 238, 550
MalI	GATC	4 cut(s)	18, 888, 901, 905
MboI	GATC	4 cut(s)	16, 886, 899, 903
MboII	GAAGA	5 cut(s)	146, 194, 587, 704, 707
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	932
MluCI	AATT	5 cut(s)	460, 504, 720, 858, 873
MmeI	TCCRAC	1 cut(s)	823
MseI	TTAA	5 cut(s)	141, 173, 357, 861, 876
MslI	CAYNNNNRTG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	97, 530, 792, 951
NdeII	GATC	4 cut(s)	16, 886, 899, 903
NmuCI	GTSAC	3 cut(s)	45, 238, 550
PaeR7I	CTCGAG	1 cut(s)	368
PceI	AGGCCT	2 cut(s)	169, 687
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	496, 938
PfeI	GAWTC	2 cut(s)	375, 607
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	90, 788
Ple19I	CGATCG	2 cut(s)	902, 906
PshBI	ATTAAT	1 cut(s)	876
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	886
PvuI	CGATCG	2 cut(s)	902, 906
RsaI	GTAC	2 cut(s)	107, 760
RsaNI	GTAC	2 cut(s)	106, 759
RseI	CAYNNNNRTG	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	141, 173, 357, 861, 876
SatI	GCNGC	2 cut(s)	89, 787
Sau3AI	GATC	4 cut(s)	16, 886, 899, 903
Sau96I	GGNCC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	932
SetI	ASST	9 cut(s)	141, 210, 240, 367, 478, 557, 858, 929, 944
SfaNI	GCATC	2 cut(s)	152, 520
SfcI	CTRYAG	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	101, 368
SmoI	CTYRAG	2 cut(s)	101, 368
Sse9I	AATT	5 cut(s)	460, 504, 720, 858, 873
SseBI	AGGCCT	2 cut(s)	169, 687
SsiI	CCGC	3 cut(s)	88, 438, 620
SspMI	CTAG	1 cut(s)	593
StuI	AGGCCT	2 cut(s)	169, 687
TaaI	ACNGT	5 cut(s)	244, 282, 388, 820, 841
TaiI	ACGT	2 cut(s)	557, 944
TaqI	TCGA	2 cut(s)	369, 902
TasI	AATT	5 cut(s)	460, 504, 720, 858, 873
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	375, 607
Tru1I	TTAA	5 cut(s)	141, 173, 357, 861, 876
Tru9I	TTAA	5 cut(s)	141, 173, 357, 861, 876
TscAI	CASTG	2 cut(s)	247, 391
TseFI	GTSAC	3 cut(s)	45, 238, 550
TseI	GCWGC	1 cut(s)	786
Tsp45I	GTSAC	3 cut(s)	45, 238, 550
TspDTI	ATGAA	5 cut(s)	195, 237, 375, 588, 732
TspRI	CASTG	2 cut(s)	247, 391
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	928
VspI	ATTAAT	1 cut(s)	876
XapI	RAATTY	2 cut(s)	504, 720
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.