pycom04g11190

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
14046561 .. 14048372
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
ATGGGCATCTTTTCGTTGGTGACAGGAAGGCCAGGGCCTAGTGGATTTGGATCAGCTTCCACTGCTGAGCAGGTTACTGAAGGAGTTGATGCATCCAACCTTACTGCTATTGTGACTGGAGGGGCAAGTGGGATTGGATTTGAGACTGCAAGGGTGTTGGCACTTCGCAGAGCCCATGTCATCATTGCTGCTAGAAACCTTGAGGCTGCAAACGAAGCTAAACAACTTATTCTCAAAGAAAATAAAACTGCACGAGTGGATGTTCTCAAACTTGACCTCTGCTCTATCAAGTCTGTTAGAGCATTCGTCGATAGCTTCAGCGCTCTTGATCTCCCGCTCAACCTCTTAATCTTTCGGAAGATGGAATTGAGATGCAATTTGCAACCAACCATCTTGGTAATTACTATGATTCATATTTTTGTTGGGATCTATCAGATGTCATTGATGATTACTTATAAAAACCTTTTTAGTTATTTTATTCAAGTTGAGCCAATTACCTATTTTACAGGTCATTTTCTCTTAACAAACCATCTCCTTGAGAAAATGAAGCATACTGCTAGAACTACTGGTGTAGAAGGAAGGATTGTGAACTTGTCATCAATTGCTCATATACACTCTTATGAAGACGGGATTCGATTCGAAGAGATCAATGATCGAAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

8.93

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 116 6.8e-10 short chain dehydrogenase
KR PF08659 35 - 112 2.4e-06 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
Acc36I ACCTGC 2 cut(s) 61, 651
AccBSI CCGCTC 1 cut(s) 337
AciI CCGC 1 cut(s) 335
AclWI GGATC 2 cut(s) 58, 434
AcuI CTGAAG 2 cut(s) 99, 301
AfeI AGCGCT 1 cut(s) 322
AgsI TTSAA 1 cut(s) 482
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 56, 218, 315
AluI AGCT 3 cut(s) 56, 218, 315
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 58, 434
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 2 cut(s) 29, 35
ApeKI GCWGC 2 cut(s) 188, 206
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 639
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 175, 193
BccI CCATC 3 cut(s) 355, 398, 537
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 39, 192, 558
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 2 cut(s) 61, 651
BisI GCNGC 2 cut(s) 189, 207
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 190, 208
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 4 cut(s) 15, 79, 101, 362
BpiI GAAGAC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 221, 557
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 121, 571
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 92, 265
BseJI GATNNNNATC 1 cut(s) 49
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 121, 571
BseXI GCAGC 2 cut(s) 175, 193
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 31, 37
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 31, 37
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 5 cut(s) 50, 328, 426, 645, 652
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 335
BspANI GGCC 2 cut(s) 31, 37
BspCNI CTCAG 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 61, 651
BspPI GGATC 2 cut(s) 58, 434
BspT104I TTCGAA 1 cut(s) 639
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 121, 571
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 5 cut(s) 50, 328, 426, 645, 652
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 92, 265
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 5 cut(s) 53, 331, 429, 648, 655
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 5 cut(s) 50, 328, 426, 645, 652
BstMWI GCNNNNNNNGC 2 cut(s) 62, 215
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 175, 193
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 2 cut(s) 31, 37
BtsCI GGATG 2 cut(s) 92, 265
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 2 cut(s) 61, 651
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 1 cut(s) 176
CviJI RGCY 8 cut(s) 31, 37, 56, 173, 206, 218, 315, 490
CviKI_1 RGCY 8 cut(s) 31, 37, 56, 173, 206, 218, 315, 490
DdeI CTNAG 1 cut(s) 66
DpnI GATC 5 cut(s) 52, 330, 428, 647, 654
DpnII GATC 5 cut(s) 50, 328, 426, 645, 652
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 99, 301
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 1 cut(s) 179
FaiI YATR 8 cut(s) 177, 407, 414, 456, 552, 609, 611, 621
FatI CATG 1 cut(s) 175
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 189, 207
FokI GGATG 2 cut(s) 79, 272
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 2 cut(s) 189, 207
FspBI CTAG 3 cut(s) 39, 192, 558
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 189, 207
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 31, 37
HhaI GCGC 1 cut(s) 323
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 3 cut(s) 409, 631, 636
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 357, 435
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 21, 74, 569, 573
HpyCH4V TGCA 6 cut(s) 92, 149, 209, 251, 375, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 215
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 5 cut(s) 50, 328, 426, 645, 652
LpnPI CCDG 8 cut(s) 9, 18, 45, 56, 102, 492, 552, 646
Lsp1109I GCAGC 2 cut(s) 175, 193
LweI GCATC 4 cut(s) 15, 79, 101, 362
MaeI CTAG 3 cut(s) 39, 192, 558
MaeIII GTNAC 3 cut(s) 19, 73, 112
MalI GATC 5 cut(s) 52, 330, 428, 647, 654
MbiI CCGCTC 1 cut(s) 337
MboI GATC 5 cut(s) 50, 328, 426, 645, 652
MboII GAAGA 3 cut(s) 370, 635, 653
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 5 cut(s) 365, 376, 399, 492, 600
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 113, 196, 287, 353
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 2 cut(s) 347, 521
MslI CAYNNNNRTG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 62, 215
NdeII GATC 5 cut(s) 50, 328, 426, 645, 652
NlaIII CATG 1 cut(s) 179
NmuCI GTSAC 2 cut(s) 19, 112
NsiI ATGCAT 1 cut(s) 94
NspV TTCGAA 1 cut(s) 639
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 3 cut(s) 409, 631, 636
PkrI GCNGC 2 cut(s) 190, 208
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 347, 521
SatI GCNGC 2 cut(s) 189, 207
Sau3AI GATC 5 cut(s) 50, 328, 426, 645, 652
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 4 cut(s) 15, 79, 101, 362
SfuI TTCGAA 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 200, 536
SmoI CTYRAG 2 cut(s) 200, 536
Sse9I AATT 5 cut(s) 365, 376, 399, 492, 600
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 39, 192, 558
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 4 cut(s) 309, 634, 639, 655
TasI AATT 5 cut(s) 365, 376, 399, 492, 600
TfiI GAWTC 3 cut(s) 409, 631, 636
Tru1I TTAA 2 cut(s) 347, 521
Tru9I TTAA 2 cut(s) 347, 521
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 2 cut(s) 19, 112
TseI GCWGC 2 cut(s) 188, 206
Tsp45I GTSAC 2 cut(s) 19, 112
TspDTI ATGAA 3 cut(s) 401, 560, 636
TspRI CASTG 1 cut(s) 67
XspI CTAG 3 cut(s) 39, 192, 558
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.