pycom04g11240

seed maturation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
14132677 .. 14134329
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGAGGAATTCAAAGAAAATTTCATACATGCCTTTCATTTCTCGTTTATTCAAAGTCTGTTTAATACACTTTCAAATCATACAAAAATCTAGAGAATTGGTAGATTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACACTTTATATTTTCTTCATTTTCCCCTTTTTAATTCTCAACGGCTCTGCACAATACGACGTCGTTGCCCAAACTGCTTTATATCAGCGCGTTCCTTTTCCTCAATGCACAACACAAACAGCACCTCTTCACTCTCTCGGAAGGCTTCGTCTACCTTCGTCACTGACCGAGTAATCGACTCCAAAAACTGTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
TENA_THI-4

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

10.44

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 128
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 7, 18, 117
AcyI GRCGYC 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 12, 52, 74
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 3 cut(s) 7, 18, 117
AspLEI GCGC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 117, 221
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 133, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 133, 142
BseLI CCNNNNNNNGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 149
BspANI GGCC 1 cut(s) 132
BspFNI CGCG 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 133, 142
BssNI GRCGYC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 141
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 253
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 132, 147, 162, 208, 308
CviKI_1 RGCY 5 cut(s) 132, 147, 162, 208, 308
DraIII CACNNNGTG 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 132
EcoRI GAATTC 2 cut(s) 7, 117
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 25, 29, 80, 172, 245
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 160
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 132
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 2 cut(s) 151, 341
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 315
Hpy99I CGWCG 2 cut(s) 225, 228
HpyAV CCTTC 2 cut(s) 298, 328
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 2 cut(s) 124, 223
HpyCH4V TGCA 2 cut(s) 213, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 124, 223
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 251
LpnPI CCDG 3 cut(s) 128, 155, 169
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 124, 223
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 2 cut(s) 170, 282
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 7, 18, 95, 117, 196
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 2 cut(s) 274, 298
MseI TTAA 2 cut(s) 62, 195
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 237
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PfeI GAWTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 62, 195
SatI GCNGC 1 cut(s) 160
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 149
SetI ASST 5 cut(s) 127, 144, 226, 290, 320
Sse9I AATT 5 cut(s) 7, 18, 95, 117, 196
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 2 cut(s) 127, 226
TaqI TCGA 2 cut(s) 149, 339
TaqII GACCGA 1 cut(s) 345
TasI AATT 5 cut(s) 7, 18, 95, 117, 196
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 62, 195
Tru9I TTAA 2 cut(s) 62, 195
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 12, 25, 170
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 128
XapI RAATTY 3 cut(s) 7, 18, 117
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 1 cut(s) 90
ZraI GACGTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.