pycom04g12050
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
15020514 .. 15020817
304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGATTCCCACCGCAATTAAGCTATCACGATCTGCGGCCACTGTCGCTCGAACCGCCAAGCTTGGGCCCTCCATACGATCACCGCTGTTCAGGCTAGTCCACGGCGGGATCAACGGCTCAAACGCCAACCCTGTTGCTCTTCAGATCGATCAACTACGCCCTCTCTCACGCCAGGTCTCAGAAATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_7

Protein Analysis

64

Amino Acids

6.75

Weight (kDa)

12.0

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 12, 35, 54, 83, 105
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 63
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 22, 61
AluI AGCT 2 cut(s) 22, 61
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 36, 65
ApaI GGGCCC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 65, 66
AsuHPI GGTGA 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 69
BceAI ACGGC 2 cut(s) 118, 130
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 65, 66
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 69
BshFI GGCC 2 cut(s) 38, 67
BshVI ATCGAT 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 38, 67
Bso31I GGTCTC 1 cut(s) 181
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 5 cut(s) 29, 77, 108, 144, 148
BspACI CCGC 5 cut(s) 12, 35, 54, 83, 105
BspANI GGCC 2 cut(s) 38, 67
BspCNI CTCAG 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 5 cut(s) 29, 77, 108, 144, 148
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 5 cut(s) 32, 80, 111, 147, 151
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 5 cut(s) 29, 77, 108, 144, 148
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 91
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 2 cut(s) 38, 67
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 65, 66
ClaI ATCGAT 1 cut(s) 147
CviJI RGCY 6 cut(s) 22, 38, 61, 67, 94, 117
CviKI_1 RGCY 6 cut(s) 22, 38, 61, 67, 94, 117
DdeI CTNAG 1 cut(s) 178
DpnI GATC 5 cut(s) 31, 79, 110, 146, 150
DpnII GATC 5 cut(s) 29, 77, 108, 144, 148
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 69
FaiI YATR 1 cut(s) 74
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 38, 67
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 144, 181, 188
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 91
HpyF3I CTNAG 1 cut(s) 178
Kzo9I GATC 5 cut(s) 29, 77, 108, 144, 148
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 76, 144, 158, 185
MaeI CTAG 1 cut(s) 95
MalI GATC 5 cut(s) 31, 79, 110, 146, 150
MboI GATC 5 cut(s) 29, 77, 108, 144, 148
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 15
MnlI CCTC 2 cut(s) 79, 171
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 91
NdeII GATC 5 cut(s) 29, 77, 108, 144, 148
NlaIV GGNNCC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 67
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 65, 66
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 29, 77, 108, 144, 148
Sau96I GGNCC 2 cut(s) 65, 66
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 69
SetI ASST 3 cut(s) 24, 63, 177
Sse9I AATT 1 cut(s) 15
SsiI CCGC 5 cut(s) 12, 35, 54, 83, 105
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 49, 147
TasI AATT 1 cut(s) 15
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.