Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15277087 .. 15277662

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACAGAACCATCGCTGCTATCAAGCACACCAAGCACGGTGACACCGAGGGAGCCAGGTGAGACTCATTGGCCGCTGTATCAACCTATCCTCGTATATGAATACGTTCCAAATGGAAATCTTTCTGATCATCTTCATTGTCGTCACAGCAGAAAATGGGCTCCGATTGGTTGGCGTCAGAGGCTCCGAATTGCTCACCAAACAGCTGAAGGCCTTGCCTATCGTTCACTTTTCTGCAGTGCAACCCTGATTACCTCAGTAACTTTCAGCTCCCGGATAAGATCGACGTTTACAGCTTTGGTGTTGTACTGTTGGAGCTGTAGACTTCTCAGGAGGTTATCGATTTCAACAGACGAGAGGAAGATACAAGATTGGTGCCGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.88

Weight (kDa)

9.59

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	308, 382
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	206, 270, 296, 318
AluI	AGCT	4 cut(s)	206, 270, 296, 318
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	71, 211
ApeKI	GCWGC	1 cut(s)	16
Asp700I	GAANNNNTTC	2 cut(s)	105, 121
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	52, 71, 188
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	235, 319
BisI	GCNGC	2 cut(s)	17, 74
BlsI	GCNGC	2 cut(s)	18, 75
Bme1390I	CCNGG	2 cut(s)	57, 274
BmiI	GGNNCC	4 cut(s)	54, 162, 185, 377
BmrFI	CCNGG	2 cut(s)	57, 274
BpuMI	CCSGG	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	270, 343
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	2 cut(s)	73, 213
BshNI	GGYRCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	73, 213
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	127, 281
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	73, 213
BspCNI	CTCAG	2 cut(s)	269, 342
BspDI	ATCGAT	1 cut(s)	341
BspLI	GGNNCC	4 cut(s)	54, 162, 185, 377
BspMAI	CTGCAG	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	127, 281
BssNI	GRCGYC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	40, 311
BstACI	GRCGYC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	256, 329
BstKTI	GATC	2 cut(s)	130, 284
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	127, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 181
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	55, 272
BstSFI	CTRYAG	2 cut(s)	235, 319
BstV1I	GCAGC	1 cut(s)	3
Bsu15I	ATCGAT	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	73, 213
BsuTUI	ATCGAT	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	341
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	307, 381
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	9 cut(s)	55, 73, 161, 184, 206, 213, 270, 296, 318
CviKI_1	RGCY	9 cut(s)	55, 73, 161, 184, 206, 213, 270, 296, 318
CviQI	GTAC	2 cut(s)	307, 381
DdeI	CTNAG	2 cut(s)	256, 329
DpnI	GATC	2 cut(s)	129, 283
DpnII	GATC	2 cut(s)	127, 281
EaeI	YGGCCR	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	387
FaiI	YATR	3 cut(s)	97, 99, 385
FatI	CATG	1 cut(s)	383
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	17, 74
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	17, 74
GluI	GCNGC	2 cut(s)	17, 74
HaeIII	GGCC	2 cut(s)	73, 213
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	3 cut(s)	52, 71, 188
Hpy166II	GTNNAC	3 cut(s)	227, 291, 323
Hpy188I	TCNGA	4 cut(s)	127, 165, 180, 188
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	3 cut(s)	227, 291, 323
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	40, 311
HpyCH4IV	ACGT	2 cut(s)	105, 287
HpyCH4V	TGCA	2 cut(s)	237, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 181
HpyF3I	CTNAG	2 cut(s)	256, 329
HpySE526I	ACGT	2 cut(s)	105, 287
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 281
LmnI	GCTCC	5 cut(s)	52, 166, 189, 275, 315
LpnPI	CCDG	5 cut(s)	42, 69, 260, 287, 316
Lsp1109I	GCAGC	1 cut(s)	3
MaeII	ACGT	2 cut(s)	105, 287
MaeIII	GTNAC	3 cut(s)	40, 143, 259
MalI	GATC	2 cut(s)	129, 283
MboI	GATC	2 cut(s)	127, 281
MboII	GAAGA	2 cut(s)	125, 373
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	42, 101, 174, 265, 327, 351
MroXI	GAANNNNTTC	2 cut(s)	105, 121
MspA1I	CMGCKG	2 cut(s)	76, 206
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	57, 274
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	33, 181
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	127, 281
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	4 cut(s)	54, 162, 185, 377
NmuCI	GTSAC	2 cut(s)	40, 143
PceI	AGGCCT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdmI	GAANNNNTTC	2 cut(s)	105, 121
PfoI	TCCNGGA	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	18, 75
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	4 cut(s)	54, 162, 185, 377
PstI	CTGCAG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	308, 382
RsaNI	GTAC	2 cut(s)	307, 381
SatI	GCNGC	2 cut(s)	17, 74
Sau3AI	GATC	2 cut(s)	127, 281
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	57, 274
SduI	GDGCHC	1 cut(s)	163
SfcI	CTRYAG	2 cut(s)	235, 319
Sse9I	AATT	1 cut(s)	189
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	55, 272
TaaI	ACNGT	2 cut(s)	40, 311
TaiI	ACGT	2 cut(s)	108, 290
TaqI	TCGA	2 cut(s)	284, 341
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	76
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	40, 143
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	2 cut(s)	40, 143
TspDTI	ATGAA	2 cut(s)	114, 125
TspRI	CASTG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	2 cut(s)	105, 121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.