pycom04g12870

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
15872925 .. 15873296
372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGGTGGTGCGGTCAGATACGCTTTCGGGGGAGCAAGGAGAGCACGTGATTCCGATGGAGCTGGAGATGGGTACCGTTTCCCCAAAGATAGGGGTCTTATAGTGGGGTGGGCCCCCCAAGAAGAGGCCCTGGCTCACAAAGATGTGGGCGGGTTTGTAACCCAATGTGGGTGGAACTCGATTCTTGAGGGCATTTGGGCGGGAGTGCCGATGCTTTGTTGGCCTCGACTGGCGGAACAACTGGTGACTAGTAGATGGATTCGTGAGGTTTGGAGGATTGGAATTGATTTGAAGGACCTGTGTGAGAGATCCATGGTGGAGAAAATGATAAGGAGATTGATGGAAGAAAGTGATGAAAGAGAGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

5.5

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 33 - 98 1.2e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 4 cut(s) 11, 150, 200, 233
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 366
AcvI CACGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 90, 124, 168
AgsI TTSAA 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 303
AoxI GGCC 3 cut(s) 111, 126, 221
ApaI GGGCCC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 366
Asp718I GGTACC 1 cut(s) 72
AspS9I GGNCC 4 cut(s) 111, 112, 127, 295
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 4 cut(s) 50, 62, 249, 334
BciT130I CCWGG 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 4 cut(s) 111, 112, 127, 295
BmiI GGNNCC 3 cut(s) 74, 113, 114
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 129, 312
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 124, 168
Bse1I ACTGG 2 cut(s) 234, 246
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 129, 312
BseLI CCNNNNNNNGG 3 cut(s) 90, 124, 168
BseNI ACTGG 2 cut(s) 234, 246
BseSI GKGCMC 1 cut(s) 115
BshFI GGCC 3 cut(s) 113, 128, 223
BshNI GGYRCC 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 90, 124, 168
BsnI GGCC 3 cut(s) 113, 128, 223
Bsp120I GGGCCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 46, 115
Bsp143I GATC 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 4 cut(s) 11, 150, 200, 233
BspANI GGCC 3 cut(s) 113, 128, 223
BspLI GGNNCC 3 cut(s) 74, 113, 114
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 72
BsrI ACTGG 2 cut(s) 234, 246
BssECI CCNNGG 2 cut(s) 129, 312
BssMI GATC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 312
BstKTI GATC 1 cut(s) 311
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 41, 220
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 3 cut(s) 113, 128, 223
BtgI CCRYGG 1 cut(s) 312
Cfr13I GGNCC 4 cut(s) 111, 112, 127, 295
Csp6I GTAC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 62, 113, 128, 134, 223
CviKI_1 RGCY 5 cut(s) 62, 113, 128, 134, 223
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 295
Eco72I CACGTG 1 cut(s) 47
EcoO109I RGGNCCY 3 cut(s) 112, 127, 295
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 101, 314
FatI CATG 1 cut(s) 312
FauI CCCGC 2 cut(s) 143, 193
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 3 cut(s) 113, 128, 223
Hin1II CATG 1 cut(s) 316
HinfI GANTC 3 cut(s) 50, 181, 259
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 17, 55
Hpy188III TCNNGA 2 cut(s) 185, 263
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 220
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 316
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 2 cut(s) 32, 59
LpnPI CCDG 6 cut(s) 48, 116, 143, 215, 227, 311
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 157, 244
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 2 cut(s) 134, 356
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 46, 115
MluCI AATT 2 cut(s) 282, 366
MnlI CCTC 6 cut(s) 118, 181, 234, 259, 267, 355
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 41, 220
NcoI CCATGG 1 cut(s) 312
NdeII GATC 1 cut(s) 308
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 74, 113, 114
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 50, 181, 259
PmaCI CACGTG 1 cut(s) 47
PmlI CACGTG 1 cut(s) 47
Ppu21I YACGTR 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 129
PspCI CACGTG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 74, 113, 114
PspOMI GGGCCC 1 cut(s) 111
PspPI GGNCC 4 cut(s) 111, 112, 127, 295
PspPPI RGGWCCY 1 cut(s) 295
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 141
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 4 cut(s) 111, 112, 127, 295
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 46, 115
SetI ASST 4 cut(s) 49, 64, 270, 300
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 2 cut(s) 282, 366
SsiI CCGC 4 cut(s) 11, 150, 200, 233
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 179, 226
TasI AATT 2 cut(s) 282, 366
TfiI GAWTC 3 cut(s) 50, 181, 259
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 366
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.