pycom04g13210

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
16190506 .. 16191421
916 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGTTGAAGGAATTATCAAAAGCATATGATCTTGCAGAGAGCAACAAGAAGGCTGCAAAACTGAAGCAGGAAGTTAACAAGAAATTCAGCAAGATCATGGATCGGGAAGATGTTAAGGAGCAGGTTGTGGCACTTAGGGTTGAGGTTGAAAACTCTGGGGTGTCTAAATTTGATGATTTGGATGACAGCCTGAAGGAGAAAATCGTGGAATTGAAGAAAGAGTTGGAGTTTGAATTTATTGATGTCCTCAAGTCATTGGGTTTGGATGTTGAATTAAAAGCAAAAGACCCAGTTGAGCAAACTTTGCCCTCAGAAGTTAAGAACAAGATCGAAGAATTGAATGGAGAGATTAATGAGAGAATTGCGAGTGTTATCAATTCGACAGACCTGAAGGACAAAATTGAGCTACTGAAGTTAGAGATAGCAAAGGCAGGGAAAACACCCGATTCAGCAGCCAAAAATAGAATCGTGGCATTGGAGCAACAAATCAAACAAAGCTTAGCAGCAGCTGTGGAATCTTCAAATTTAAAAGAGAAGCATGAGAAGCTGAAGGCCGAGATTTCCCAAAGTGTTGGATCGAATGGAAGTCTGAAGAAGGATGATGAAGATTCTTTCTCCTTTGATGCATCTAGAGTAGTGGGTGCAAATCGCACCTTCAGTTACTTCTCTTTTAGTCGGCTTGTTTGCTGA

Protein Analysis

230

Amino Acids

25.62

Weight (kDa)

5.43

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AclWI GGATC 2 cut(s) 108, 583
AcsI RAATTY 4 cut(s) 83, 167, 233, 523
AcuI CTGAAG 7 cut(s) 83, 212, 410, 431, 569, 611, 640
AgsI TTSAA 7 cut(s) 7, 149, 214, 233, 272, 340, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 4 cut(s) 406, 498, 509, 547
AluI AGCT 4 cut(s) 406, 498, 509, 547
AlwI GGATC 2 cut(s) 108, 583
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 4 cut(s) 53, 452, 503, 506
ApoI RAATTY 4 cut(s) 83, 167, 233, 523
AseI ATTAAT 1 cut(s) 351
BbvI GCAGC 4 cut(s) 40, 464, 515, 518
BfaI CTAG 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 4 cut(s) 54, 453, 504, 507
BlpI GCTNAGC 1 cut(s) 499
BlsI GCNGC 4 cut(s) 55, 454, 505, 508
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 613, 635
BmuI ACTGGG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 290
BseGI GGATG 3 cut(s) 187, 271, 604
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 4 cut(s) 40, 464, 515, 518
BshFI GGCC 1 cut(s) 554
BsnI GGCC 1 cut(s) 554
Bsp143I GATC 5 cut(s) 28, 93, 100, 327, 575
Bsp1720I GCTNAGC 1 cut(s) 499
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 108, 583
BsrI ACTGG 1 cut(s) 290
BssMI GATC 5 cut(s) 28, 93, 100, 327, 575
BstAPI GCANNNNNTGC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 134, 310, 499
BstF5I GGATG 3 cut(s) 187, 271, 604
BstKTI GATC 5 cut(s) 31, 96, 103, 330, 578
BstMBI GATC 5 cut(s) 28, 93, 100, 327, 575
BstMWI GCNNNNNNNGC 2 cut(s) 304, 544
BstV1I GCAGC 4 cut(s) 40, 464, 515, 518
BstXI CCANNNNNNTGG 1 cut(s) 572
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 3 cut(s) 187, 271, 604
BveI ACCTGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 509
CviAII CATG 2 cut(s) 97, 539
CviJI RGCY 9 cut(s) 53, 189, 406, 455, 498, 509, 547, 554, 679
CviKI_1 RGCY 9 cut(s) 53, 189, 406, 455, 498, 509, 547, 554, 679
DdeI CTNAG 3 cut(s) 134, 310, 499
DpnI GATC 5 cut(s) 30, 95, 102, 329, 577
DpnII GATC 5 cut(s) 28, 93, 100, 327, 575
DraI TTTAAA 1 cut(s) 528
Eco57I CTGAAG 7 cut(s) 83, 212, 410, 431, 569, 611, 640
EcoT22I ATGCAT 1 cut(s) 628
FaeI CATG 2 cut(s) 100, 542
FaiI YATR 4 cut(s) 25, 27, 98, 540
FatI CATG 2 cut(s) 96, 538
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 54, 453, 504, 507
FokI GGATG 3 cut(s) 194, 278, 611
Fsp4HI GCNGC 4 cut(s) 54, 453, 504, 507
FspBI CTAG 1 cut(s) 630
GluI GCNGC 4 cut(s) 54, 453, 504, 507
HaeIII GGCC 1 cut(s) 554
Hin1II CATG 2 cut(s) 100, 542
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 4 cut(s) 446, 465, 515, 608
HpaI GTTAAC 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 313, 591
Hpy188III TCNNGA 2 cut(s) 104, 630
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 6 cut(s) 43, 187, 385, 544, 589, 664
HpyCH4V TGCA 4 cut(s) 35, 56, 626, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 544
HpyF3I CTNAG 3 cut(s) 134, 310, 499
Hsp92II CATG 2 cut(s) 100, 542
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 28, 93, 100, 327, 575
LmnI GCTCC 2 cut(s) 118, 478
LpnPI CCDG 7 cut(s) 53, 107, 141, 203, 303, 401, 417
Lsp1109I GCAGC 4 cut(s) 40, 464, 515, 518
LweI GCATC 2 cut(s) 613, 635
MaeI CTAG 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 659
MalI GATC 5 cut(s) 30, 95, 102, 329, 577
MboI GATC 5 cut(s) 28, 93, 100, 327, 575
MboII GAAGA 6 cut(s) 119, 226, 344, 510, 604, 617
MmeI TCCRAC 2 cut(s) 204, 553
MnlI CCTC 3 cut(s) 136, 257, 319
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 6 cut(s) 75, 114, 275, 318, 351, 527
MspA1I CMGCKG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 304, 544
NdeI CATATG 1 cut(s) 25
NdeII GATC 5 cut(s) 28, 93, 100, 327, 575
NlaIII CATG 2 cut(s) 100, 542
NmeAIII GCCGAG 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 628
PfeI GAWTC 4 cut(s) 446, 465, 515, 608
PkrI GCNGC 4 cut(s) 55, 454, 505, 508
PshBI ATTAAT 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 509
SaqAI TTAA 6 cut(s) 75, 114, 275, 318, 351, 527
SatI GCNGC 4 cut(s) 54, 453, 504, 507
Sau3AI GATC 5 cut(s) 28, 93, 100, 327, 575
SetI ASST 8 cut(s) 126, 147, 390, 408, 500, 511, 549, 656
SfaNI GCATC 2 cut(s) 613, 635
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SspMI CTAG 1 cut(s) 630
TaqI TCGA 3 cut(s) 330, 380, 578
TfiI GAWTC 4 cut(s) 446, 465, 515, 608
Tru1I TTAA 6 cut(s) 75, 114, 275, 318, 351, 527
Tru9I TTAA 6 cut(s) 75, 114, 275, 318, 351, 527
TseI GCWGC 4 cut(s) 53, 452, 503, 506
TspDTI ATGAA 1 cut(s) 618
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 4 cut(s) 83, 167, 233, 523
XbaI TCTAGA 1 cut(s) 629
XspI CTAG 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.