pycom04g13350
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
16306033 .. 16306239
207 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGAGCATTGACTGGAAATCGCCCGATGAGGGACAGCAAATGGTTTTCGGTTCTGCAAATGGGAACAACTTCATGGGACCGTTTTGTGGGATGTCTTCACATGTACCTAAGCTTGAGGAGAAAAATTTTCTGAGTGGCAATCTTCATGGATCGCAGTTGGGACATTACAATGCCTGTTTTGAGATGCAATCAATGCGATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.63

Weight (kDa)

5.78

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 29, 86
AflIII ACRYGT 1 cut(s) 100
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 86
Bse1I ACTGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 29, 86
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 131
BslFI GGGAC 3 cut(s) 45, 90, 174
BslI CCNNNNNNNGG 2 cut(s) 29, 86
BsmFI GGGAC 3 cut(s) 45, 90, 174
Bsp143I GATC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 108, 131
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 73, 101, 146
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 108, 131
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 77
EcoRV GATATC 1 cut(s) 200
FaeI CATG 3 cut(s) 76, 104, 149
FaiI YATR 3 cut(s) 74, 102, 147
FaqI GGGAC 3 cut(s) 45, 90, 174
FatI CATG 3 cut(s) 72, 100, 145
FokI GGATG 1 cut(s) 103
Hin1II CATG 3 cut(s) 76, 104, 149
HindIII AAGCTT 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 56, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 108, 131
Hsp92II CATG 3 cut(s) 76, 104, 149
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 1 cut(s) 187
LweI GCATC 1 cut(s) 174
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 2 cut(s) 87, 134
MluCI AATT 1 cut(s) 124
MnlI CCTC 2 cut(s) 22, 109
MroXI GAANNNNTTC 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 76, 104, 149
NlaIV GGNNCC 1 cut(s) 78
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 168
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 77
SetI ASST 2 cut(s) 109, 114
SfaNI GCATC 1 cut(s) 174
SgeI CNNG 7 cut(s) 25, 35, 85, 113, 125, 158, 186
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 124
TaaI ACNGT 1 cut(s) 81
TasI AATT 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 61, 134
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 124
XceI RCATGY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.